micro_localreadVcf: benchmark readVcf for select genomic interval, and return the...
In shwetagopaul92/benchmark: Benchmarking performance of VariantAnnotation methods and GoogleGenomics methods
Usage
Arguments
Value
Author(s)
View source: R/benchmarks_localreadVCF.R
Usage
1
2
micro_localreadVcf(chr = "22", start = 16051400, end = 16051500,
times = 5)
Arguments
chr
character encoding chromosome in the vcf
start
starting location for interval to search for variants
end
end location of interval
times
passed to microbenchmark
Value
a list with components bench giving timings, data giving variants, and call describing call
Author(s)
Shweta Gopaulakrishnan <reshg@channing.harvard.edu>
shwetagopaul92/benchmark documentation built on May 29, 2019, 9:58 p.m.
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Usage Arguments Value Author(s)
View source: R/benchmarks_localreadVCF.R
Usage
1 2 | micro_localreadVcf(chr = "22", start = 16051400, end = 16051500,
times = 5)
|
Arguments
chr |
character encoding chromosome in the vcf |
start |
starting location for interval to search for variants |
end |
end location of interval |
times |
passed to |
Value
a list with components bench giving timings, data giving variants, and call describing call
Author(s)
Shweta Gopaulakrishnan <reshg@channing.harvard.edu>
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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