dssSNF: Call selected functions from the package SNFtool

In sib-swiss/dsSwissKnifeClient: DataSHIELD Tools and Utilities - client side

Call selected functions from the package SNFtool

Description

At the moment the functions 'standardNormalization','dist2','affinityMatrix' and 'spectralClustering' are implemented

Usage

dssSNF(
  func,
  symbols,
  ...,
  action = c("keep", "return"),
  keep.name = NULL,
  async = TRUE,
  datasources = NULL
)

Arguments

func	a character, the name of the function to call
symbols	a character vector, name(s) of the input object(s) to the function.
...	furhter arguments which will be passed to the function (see documentation of the SDFtool package)
action	a character vector, what to do with the result. 'return' doesn't work for standardNormalization as it would disclose individual data.
keep.name	a character, if action is 'keep', the name of the output object on the remote nodes. If NULL, a name will be generated.
async	a logical, see datashield.aggregate
datasources	a list of opal objects obtained after logging into the opal servers (see datashield.login)

Details

The input to the function standardNormalizaton must be a dataframe containing the SUBJID colum and must *not* be transposed

sib-swiss/dsSwissKnifeClient documentation built on July 16, 2025, 6:25 p.m.