NEWS.md

In sidora-tools/sidora.core: Basic Interface for PANDORA (MPI-EVA DAG)

sidora 2.4.1 - 2024-05-02

Changes in columns/tables

• TAB_Site: +Master_Site_Id
• TAB_Individual: +Main_Individual_Id, +Publication, +Exclude
• TAB_Sample: +Exclude
• TAB_Extract: +CoreDB_Subsample_Id, +Exclude
• TAB_Library: +Concentration_Post_Plateau_Indexing, +Exclude
• TAB_Capture: +Exclude
• TAB_Sequencing: +Exclude

sidora 2.4.0 - 2023-04-21

New features

• get_df() allows now to request tables not known to sidora.core. The respective error was turned into a warning (#64)
• added a new test to check if pandora_column_types and pandora_table_elements are in sync
• added a new test to check if pandora_column_types actually specifies all variables in Pandora

Changes in columns/tables

• TAB_Site: +Date_From, +Date_To, +Date_Info
• TAB_Individual: +Genetic_Sex, +Archaeological_Date_From, +Archaeological_Date_To, +Archaeological_Date_Info, +Archaeological_Culture, +Archaeological_Period, C14_C:N -> C14_C_N
• TAB_Extract: +Robot_Name, -Position_on_Plate, +CoreDB_Lysate_Id
• TAB_Library: +Robot_Name, -Position_on_Plate
• TAB_Capture: +Robot_Name, -Position_on_Plate, +CoreDB_Pool_Id
• TAB_Protocol: +Library_UDG
• +TAB_Archaeological_Culture
• +TAB_Archaeological_Period
• +TAB_Osteological_Age
• +TAB_Sequencing_Setup

sidora 2.3.3 - 2023-03-28

• Fixed a small bug arising from a change in dplyr 1.1.0. The fix is implemented in a backwards compatible way. See https://github.com/sidora-tools/sidora.core/pull/68

sidora 2.3.2 - 2022-11-04

• Update dependencies versions in conda environment.yml: r-lang 0.4.11 to 1.0.5

sidora 2.3.1 - 2022-07-06

• Fix bug in covert_all_ids_to_values() where Index IDs were incorrectly reported to due inconsistency within Pandora in the way it calls index information compared to other tables.

sidora 2.3.0 - 2022-05-06

• Added new column and auxiliary table information (TAB_Individual)

sidora 2.2.0 - 2022-05-06

• Added documentation of internal sidora data structure

sidora 2.1.1

• Added a package start-up message to warn about potential ethical snares.

sidora 2.1.0

• Added new function get_field_help() for printing Pandora webpage help messages on the R console.
• Added support for field CT_scanned.
• Updated renamed column Owning Institution -> Institution of Origin.

sidora 2.0.3

• A small fix in format_as_update_existing().

sidora 2.0.2

• Adds a type definition for the CoreDB_Id column in TAB_Sample, TAB_Extract, TAB_Library and TAB_Capture.

sidora 2.0.1

• Small fixes in the documentation and in an error message.

sidora 2.0.0 - Phoebe

• Applied some small but breaking changes to the way connections to the Pandora database server are established.

sidora 1.0.0 - Mnemosyne

• First stable release.

sidora-tools/sidora.core documentation built on May 4, 2024, 12:14 a.m.