assignColors: assignColors

In sigbertklinke/plot.matrix: Visualizes a Matrix as Heatmap

assignColors

Description

Assign to each value in x a color according to the choices of breaks and col.

Usage

assignColors(x, breaks = NULL, col = heat.colors, na.col = "white")

Arguments

x	numeric or non-numeric vector
breaks	vector with breaks
col	vector with colors or color function
na.col	color for NA or out-of-range values

Details

Depending if x is a numeric or non-numeric vector colors are assigned to each value.

In case of a numeric vector breaks can be

• a number, giving the number of intervals covering the range of x,

• a vector of two numbers, given the range to cover with 10 intervals, or

• a vector with more than two numbers, specify the interval borders

In case of a non-numeric vector breaks must contain all values which are will get a color. If breaks is not given then a sensible default is choosen: in case of a numeric vector derived from pretty and otherwise all unique values/levels are used.

col can be either be a vector of colors or a function which generates via col(n) a set of n colors. The default is to use heat.colors.

Possible color functions in R packages can be found by vignette('plot.matrix').

Value

vector of color with the same length as x with the attributes breaks the breaks used, col the color coding and na.col the color for NA and out-of-range entries

Examples

## numeric vector
x <- runif(10)
assignColors(x)
# set breaks
assignColors(x, breaks=15)
assignColors(x, breaks=c(0,1))
# set colors
assignColors(x, col=c("red", "green", "blue"))
assignColors(x, col=topo.colors)
# NA and out-of-range
x[5] <- NA
assignColors(x, breaks=seq(0.5, 1, by=0.1), na.col="red")
## logical vector
l <- sample(c(NA, TRUE, FALSE), size=10, replace=TRUE)
assignColors(l)
assignColors(l, breaks=c("FALSE", "TRUE"), col=c("red", "blue"))
## character vector
t <- sample(letters, size=10, replace=TRUE)
assignColors(t)
assignColors(t, col=rainbow(5))

sigbertklinke/plot.matrix documentation built on April 2, 2022, midnight