convert_coloc_data: Convert 'coloc.abf' data to 'JAM' format
In simisc/cojam: Multi-variant colocalisation with summary genetic association data
Description
Convert coloc.abf data to the format required by
JAM, using jam_wrap.
Usage
1
convert_coloc_data(coloc_data, ref_genotypes)
Arguments
coloc_data
Data formatted for coloc.abf
ref_genotypes
Reference genotype matrix used by JAM to impute the SNP-SNP
correlations. Genotypes must be coded as a numeric risk allele
count 0/1/2. Non-integer values reflecting imputation may be given. NB: The
risk allele coding must correspond to that used in coloc_data. Must be
positive definite, with SNP identifiers in the column names.
simisc/cojam documentation built on Dec. 31, 2020, 7:26 a.m.
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Description
Convert coloc.abf data to the format required by
JAM, using jam_wrap.
Usage
1 | convert_coloc_data(coloc_data, ref_genotypes)
|
Arguments
coloc_data |
Data formatted for |
ref_genotypes |
Reference genotype matrix used by JAM to impute the SNP-SNP
correlations. Genotypes must be coded as a numeric risk allele
count 0/1/2. Non-integer values reflecting imputation may be given. NB: The
risk allele coding must correspond to that used in |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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