plot_trajectories: Plot SARS-CoV-2(+) trajectories
In simonpcastillo/CPAD: The Non-linear Spread of SARS-CoV-2

Description Usage Arguments Value Author(s) Examples

View source: R/plot_trajectories.R

This function plots the temporal tendencies in #SARS-CoV-2(+) and its proportional abundance each log-transformed data and insets with corresponding non-transformed data.

plot_trajectories(
  inc.df,
  propab.df,
  disease,
  plot.inc = TRUE,
  plot.propab = TRUE,
  saveplots = TRUE,
  saveplots.ext = ".png"
)

`inc.df:`	dataframe. The incidence dataframe.
`propab.df:`	dataframe. The proportional abundance dataframe. #' @param disease: character. Name of the disease. It will apply if the plots are saved.
`plot.inc:`	`TRUE` or `FALSE`. Plot incidence trajectory. Default `TRUE`.
`plot.propab:`	`TRUE` or `FALSE`. Plot proportional abundance trajectory. Default `TRUE`.
`saveplots:`	`TRUE` or `FALSE`. Save the plots in your `wd`.Default `TRUE`.
`saveplots.ext:`	character. The extension for the saved figures admitted by `ggsave` (e.g., `".png"`, `".svg"`).Default `".png"`.

This function returns to your global environment an object list named plotTraj with the plot(s) created. Also, if saveplots is TRUE, a folder named plots is created in your wd.

Simon P Castillo spcastil@uc.cl.