seqfishLabels: seqfishLabels

In singha53/ssenet: Semi-supervised implementation of glmnet

Description

Spatial cluster labels and SVM learned cell types for seqFISH

Usage

data(seqfishLabels)

Format

An object of class "data.frame";

seqfishLabels

1597 cells x 5 variables (Cell ID, Spatial cluster, cell-type class, ID of cell type class and probability of the predicted cell-type label)

References

Zhu et al. Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data. Nat Biotechnol. 2018 Oct 29. (Zhu et al 2018)

Examples

library(ssenet)
data(seqfishLabels)

singha53/ssenet documentation built on March 17, 2020, 4:41 a.m.