lcms_list_mzxml_samples: RAW converter

In sipss/AlpsLCMS: Signal processing of LC-MS metabolomics

Description

The function lists and converts samples in ".raw" format to ".mzXML" format. It is the first step to create a lcms_dataset. It requires the previous download and installation of the RawConverter application.

Usage

lcms_list_mzxml_samples(
  sample_path,
  file_format = "mzXML",
  rawconverter_path = NULL
)

Arguments

sample_path	Directory in which the samples are.
file_format	Format of the LC-MS files (e.g. file_format = "raw").
rawconverter_path	Directory in where the RawConverter application is located.

Value

A list of the LC-MS files in a readable format to create the lcms_dataset.

Examples

## Not run: 
sample_path <- system.file("extdata", package = "AlpsLCMS")
samples_mzxml <- lcms_list_mzxml_samples(sample_path,
                                    file_format = "mzXML")
print(samples_mzxml)

## End(Not run)

sipss/AlpsLCMS documentation built on May 13, 2021, 6:18 p.m.