nmr_baseline_threshold_plot: Plot the baseline thresholds

In sipss/AlpsNMR: Automated spectraL Processing System for NMR

Plot the baseline thresholds

Description

If you have a lot of samples you can make the plot window bigger (or use "⁠ ```{r fig.height=10, fig.width=10}⁠" in notebooks), or choose some NMRExperiments.

Usage

nmr_baseline_threshold_plot(
  nmr_dataset,
  thresholds,
  NMRExperiment = "all",
  chemshift_range = c(9.5, 10),
  ...
)

Arguments

nmr_dataset	An nmr_dataset_1D object
thresholds	A named vector. The values are baseline thresholds. The names are NMRExperiments.
NMRExperiment	The NMRExperiments to plot (Use "all" to plot all of them)
chemshift_range	The range to plot, as a first check use the range_without_peaks from nmr_baseline_threshold
...	arguments passed to ggplot2::aes (or to ggplot2::aes_string, being deprecated).

Value

A plot.

Examples

ppm_axis <- seq(from = 0, to = 10, length.out = 1000)
data_1r <- matrix(runif(1000, 0, 10), nrow = 1) + 100
dataset_1D <- new_nmr_dataset_1D(
    ppm_axis = ppm_axis,
    data_1r = data_1r,
    metadata = list(external=data.frame(NMRExperiment = "10"))
)
bl_threshold <- nmr_baseline_threshold(dataset_1D, range_without_peaks = c(9.5,10))
baselineThresh <- nmr_baseline_threshold(dataset_1D)
nmr_baseline_threshold_plot(dataset_1D, bl_threshold)

sipss/AlpsNMR documentation built on Aug. 13, 2024, 5:11 p.m.