TCGA_Breast_miRNASeq_voom: Example breast miRNA-Seq voom-transformed count dataset.

In siskac/discordant: The Discordant Method: A Novel Approach for Differential Correlation

Description

This dataset contains TMM normalized voom-transformed miRNA count values from miRNASeq that was taken from the Cancer Genome Atlas, or TCGA. The dataset has 100 miRNA and 57 samples. The original dataset has 212 miRNA and 57 samples.

Usage

data(TCGA_Breast_miRNASeq_voom)

Format

An ExpressionSet with 100 features and 57 samples

Source

http://cancergenome.nih.gov/

References

Charity W Law, Yunshun Chen, Wei Shi, Gordon K Smyth. voom: precision weights unlock linear model analysis tools for RNA-seq read counts. 2014. Genome Biology, 15:R29.

National Institues of Health. The Cancer Genome Atlas.

Examples

  data(TCGA_Breast_miRNASeq_voom)

siskac/discordant documentation built on Feb. 11, 2022, 2:52 p.m.