In sistm/SEIRcovid19: Interface Monolix for multilevel modeling of epidemic dynamics

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
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SEIRcovid19FR

SEIRcovid19FR is an R package for multi-level inference of epidemic dynamics applied to COVID-19 in France.

Installation

You can install the development version of SEIRcovid19FR from GitHub with:

# install.packages("devtools")
devtools::install_github("sistm/SEIRcovid19")

Updating the Hospitalization data for Monolix :

1. download the new SurSaUD file in data/raw from data.gouv
2. update the file name and run the commented code in example of R/sursaud_covid19.R
3. reload the package
4. run the example script of R/prepare_data_4monolix.R

Mélanie Prague, Dan Dutartre & Boris Hejblum

sistm/SEIRcovid19 documentation built on Aug. 9, 2021, 7:37 a.m.