make_kmer_dataframe: Generate a kmer data frame
In siyangxia419/virlink: VirScan cross-reactivity and correlation analysis
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/make_kmer_dataframe.R
Description
convert a peptide data frame to kmer data frame
Usage
1
make_kmer_dataframe(peptides, kmer_length = 12, overlap = 6)
Arguments
peptides
a tibble of peptides with two columns named "id" and "pep_aa"
kmer_length
length of desired kmer
overlap
number of overlapped residuals between two consecutive kmers
Value
a data frame of kmers with the desired structure for alignment
Author(s)
Jennifer L. Remmel, Siyang Xia sxia@hsph.harvard.edu
See Also
Examples
1
2
3
data(peptide_df)
kmer_df <- make_kmer_dataframe(peptides = peptide_df)
head(kmer_df)
siyangxia419/virlink documentation built on Jan. 2, 2022, 12:16 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/make_kmer_dataframe.R
Description
convert a peptide data frame to kmer data frame
Usage
1 | make_kmer_dataframe(peptides, kmer_length = 12, overlap = 6)
|
Arguments
peptides |
a tibble of peptides with two columns named "id" and "pep_aa" |
kmer_length |
length of desired kmer |
overlap |
number of overlapped residuals between two consecutive kmers |
Value
a data frame of kmers with the desired structure for alignment
Author(s)
Jennifer L. Remmel, Siyang Xia sxia@hsph.harvard.edu
See Also
Examples
1 2 3 | data(peptide_df)
kmer_df <- make_kmer_dataframe(peptides = peptide_df)
head(kmer_df)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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