plotMizerSim: Summary plot for 'MizerSim' objects

In sizespectrum/mizer: Dynamic Multi-Species Size Spectrum Modelling

Summary plot for MizerSim objects

Description

After running a projection, produces 5 plots in the same window: feeding level, abundance spectra, predation mortality and fishing mortality of each species by size; and biomass of each species through time. This method just uses the other plotting functions and puts them all in one window.

Produces 3 plots in the same window: abundance spectra, feeding level and predation mortality of each species through time. This method just uses the other plotting functions and puts them all in one window.

Usage

## S4 method for signature 'MizerSim,missing'
plot(x, y, ...)

## S4 method for signature 'MizerParams,missing'
plot(x, y, ...)

Arguments

x	An object of class MizerSim
y	Not used
...	For additional arguments see the documentation for plotBiomass(), plotFeedingLevel(),plotSpectra(),plotPredMort() and plotFMort().

Value

A viewport object

A viewport object

See Also

plotting_functions

plotting_functions

Other plotting functions: animateSpectra(), plotBiomass(), plotDiet(), plotFMort(), plotFeedingLevel(), plotGrowthCurves(), plotPredMort(), plotSpectra(), plotYield(), plotYieldGear(), plotting_functions

Other plotting functions: animateSpectra(), plotBiomass(), plotDiet(), plotFMort(), plotFeedingLevel(), plotGrowthCurves(), plotPredMort(), plotSpectra(), plotYield(), plotYieldGear(), plotting_functions

Examples

params <-  NS_params
sim <- project(params, effort=1, t_max=20, t_save = 2, progress_bar = FALSE)
plot(sim)
plot(sim, time_range = 10:20) # change time period for size-based plots
plot(sim, min_w = 10, max_w = 1000) # change size range for biomass plot


params <-  NS_params
plot(params)
plot(params, min_w = 10, max_w = 1000) # change size range for biomass plot

sizespectrum/mizer documentation built on April 14, 2024, 3:08 a.m.