LoadData: LoadData

In sjbeckett/subregionalcovid19: Processing and mapping COVID-19 case data at subnational scales

LoadData

Description

General framework for loading and tidying data.

Usage

LoadData(
  functionNames = NULL,
  custom = FALSE,
  filepath = NULL,
  interactiveMode = interactive(),
  tidy = TRUE,
  DaysOld = 30,
  minimumpercapitaactivecases = 0,
  RiskEval = NULL,
  dropNACountry = TRUE,
  dropNAall = FALSE,
  verbose = TRUE
)

Arguments

functionNames	Name(s) of function representing that for loading data - options are in countrylist. Use NULL to attempt to download all available datasets.
custom	If TRUE, allows for use with functions not listed in object countrylist (experimental usage).
filepath	Optionally, provide a filepath to save an error csv file to.
interactiveMode	Set whether the session is being run interactively. If not and no googledrive oauth token is found, avoid data requiring googledrive auth token.
tidy	If TRUE, then perform tidying according to other parameters. If FALSE, then do nothing. (passed to tidy_Data).
DaysOld	Set any pInf data more than this days old to NA.(passed to tidy_Data).
minimumpercapitaactivecases	Set any pInf data less than this to NA.(passed to tidy_Data).
RiskEval	Set pInf to NA when risk is below RiskEval$minimumRisk (%) using RiskEval$ascertainmentbias and a maximum group size, RiskEval$maximumN (Note: this setting overwrites minimumpercapitaactivecases). (passed to tidy_Data).
dropNACountry	If TRUE, remove rows for countries whose pInf estimates all return NA.(passed to tidy_Data).
dropNAall	If TRUE, remove rows for any region whose pInf estimates all return NA. (passed to tidy_Data).
verbose	If TRUE, reports on loading progress and returns warnings/errors to console.

Value

A simple feature returning the date of most recent data (DateReport), a unique region code (geoid), the region name (RegionName) and country name (Country), the number of active cases per capita (pInf) and the regions geometry (geometry).

See Also

tidy_Data()

Examples

LoadData("LoadUS")
LoadData("LoadUS", dropNAall = TRUE)
LoadData("LoadNewZealand",tidy = FALSE)
LoadData(c("LoadUS","LoadMalaysia"))
## Not run: 
LoadData()

## End(Not run)

sjbeckett/subregionalcovid19 documentation built on Feb. 7, 2023, 6 a.m.