do_gseKEGG_plot: Do pathway GSE (gene set enrichment) Plot
In sk-sahu/sig-bio-shiny: Exploration and Significant Biology on a Gene Set.
Description
Usage
Arguments
Value
View source: R/module_enrichKEGG_utils.R
Description
Wraper function to gseKEGG with some extra functionality
specific to application.
Usage
1
do_gseKEGG_plot(id_with_fc_list, organism = "hsa", pval = "0.05")
Arguments
id_with_fc_list
A vector with gene_ids and their fold change. Much like geneList from DOSE pakage
organism
A kegg org short name
pval
P-value cut-off
Value
A GSE plot
sk-sahu/sig-bio-shiny documentation built on June 12, 2020, 8:06 p.m.
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Description Usage Arguments Value
View source: R/module_enrichKEGG_utils.R
Description
Wraper function to gseKEGG with some extra functionality
specific to application.
Usage
1 | do_gseKEGG_plot(id_with_fc_list, organism = "hsa", pval = "0.05")
|
Arguments
id_with_fc_list |
A vector with gene_ids and their fold change. Much like geneList from DOSE pakage |
organism |
A kegg org short name |
pval |
P-value cut-off |
Value
A GSE plot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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