clr_transform: Centered log-ratio (CLR) transform community data
In skembel/seqtools: Kembel lab R tools for working with sequence data
Description
Usage
Arguments
Value
Description
Centered log-ratio (CLR) transform community data
Usage
1
clr_transform(x, base = 2, ignore.zeroes = TRUE)
Arguments
x
A vegan-format matrix of samples by taxa
base
Base for logarithm (default=2)
ignore.zeroes
Should zeros be included when calculating geometric mean (default=TRUE)
Value
CLR-transformed matrix
skembel/seqtools documentation built on Oct. 22, 2020, 8:05 p.m.
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Description Usage Arguments Value
Description
Centered log-ratio (CLR) transform community data
Usage
1 | clr_transform(x, base = 2, ignore.zeroes = TRUE)
|
Arguments
x |
A vegan-format matrix of samples by taxa |
base |
Base for logarithm (default=2) |
ignore.zeroes |
Should zeros be included when calculating geometric mean (default=TRUE) |
Value
CLR-transformed matrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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