skurscheid/deepToolsUtils: Pre and postprocessing functions for HTS data analysis using deepTools

This is a collection of stand-alone functions which can be deployed in a snakemake workflow in order to create e.g. region files in BED format from existing annotation such as Ensembl GTF files. These BED files can then be used in deepTools <https://github.com/fidelram/deepTools> analysis for e.g. creating metagene plots over selected genomic features. Further functions will be added for the post-processing of deepTools output, such as the integration of gene expression data or other epigenomic data sets.

install.packages("remotes")
remotes::install_github("skurscheid/deepToolsUtils")