DownloadEnsemblGTF: Downloads GTF file from Ensembl FTP server.
In skurscheid/deepToolsUtils: Pre and postprocessing functions for HTS data analysis using deepTools
Description
Usage
Arguments
Examples
View source: R/preProcessingEnsembl.R
Description
The function takes Ensembl version, organism and a temporary directory/path as input and attempts to download
the corresponding GTF file using curl.
Usage
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DownloadEnsemblGTF(version = "current",
url = "ftp.ensembl.org/pub/current_gtf",
temp_dir = "/tmp",
organism = "homo_sapiens")
Arguments
x
Examples
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##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
## The function is currently defined as
function (x)
{
}
skurscheid/deepToolsUtils documentation built on April 25, 2020, 2:06 a.m.
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Description Usage Arguments Examples
View source: R/preProcessingEnsembl.R
Description
The function takes Ensembl version, organism and a temporary directory/path as input and attempts to download the corresponding GTF file using curl.
Usage
1 2 3 4 | DownloadEnsemblGTF(version = "current",
url = "ftp.ensembl.org/pub/current_gtf",
temp_dir = "/tmp",
organism = "homo_sapiens")
|
Arguments
x |
Examples
1 2 3 4 5 6 7 8 | ##---- Should be DIRECTLY executable !! ----
##-- ==> Define data, use random,
##-- or do help(data=index) for the standard data sets.
## The function is currently defined as
function (x)
{
}
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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