| AllRegressionPlots | All regression plots for a full HDX/DHX experiment |
| AvCent | Average Centroid Calculation |
| AverageCents | Average centroids for a complete HDX/DHX experiment |
| centroidCalc | Centroid calculation |
| centroidPlot | Centroid plotting function |
| import.identifications | Imports Scaffold file for peptide identification |
| importNew | Import Spectra function |
| linearInterp | Linear Interpolation Function |
| linearsolve | Linear Equation Solver |
| LinIntersect | Linear intersection |
| LogIntersect | Logarithmic intersection |
| mainCentMerge | Centroid calculation and uptakes for a complete peptide |
| mainCentNewMod | Centroid relative uptakes calculation and export for a single... |
| manualCentroids2 | Manual Peak Selection |
| peakPick | Peak Picking Function |
| PlotDHAll | All regression plots for a single peptide |
| PlotDHLinear | Linear regression and plotting |
| PlotDHLog | Logarithmic regression and plotting |
| PlotDHPoly2 | Polynomial (order 2) regression and plotting |
| plotLin | Linear Interpolation Plotting Function |
| plotUptake | Centroid plotting function |
| plotWidth | Width plotting function |
| PolyIntersect | Polynomial intersection |
| RecursAppend | Recursive Appending Function |
| widthFinder | Peak width calculation |
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