Man pages for smm52/timeBlocks
Converts Serial Measurement Data into Longitudinal Trajectory of Equally-sized Time Blocks
| adjustScore | Get the score from the first PC |
| calculateAdherences | Controls the adherence calculation for the whole treatment... |
| calculateFixedAdherence | Calculates medication adherence based on a fixed, specified... |
| calculateFixedAdherenceFixedPeriod | Calculates medication adherence between start and end dates |
| calculateFixedAdherenceList | Calculates medication adherence based on a fixed, specified... |
| calculateInterpolation | calculate the linear interpolation from one measurement to... |
| calculateMedicationSpecificAdherence | Calculate the adherence for each patient and all their drug... |
| calculateOneAdherenceValue | Calculate one adherence rate |
| calculatePCA | Perform the principle component analysis using a correlation... |
| calculateResponseScore | Calculates a score based on principle component analysis |
| calculateScore | Get the score from the first PC |
| checkBaselineFormat | Checks the format of the data set for the baseline dates |
| checkBaselineHospitalFormat | Checks the format of the hospital data |
| checkBinaryPrescriptionFormat | Checks the format of the data set for the prescriptions... |
| checkBlockFormat | Checks the format of the data set for the time block building |
| checkPrescriptionFormat | Checks the format of the data set for the prescriptions |
| checkResponseFormat | Checks the format whether the format for the data set is a... |
| checkStructureColumn | Checks whether a column is in a data frame and all its rows... |
| checkStructureColumnResponse | Checks whether a column is in a data frame |
| checkVizFormat | Checks the format of the data set quick visualisation |
| combineRows | Combine the information from all drug classes into one row... |
| createHospitalTimeBlocks | Calculates block data for hospitalisations |
| createMedicationTimeBlocks | Calculates the time block data for prescriptions |
| createTimeBlocks | Calculates the time block data |
| doInterpolate | calculate the linear interpolation for each consecutive set... |
| findBaselineHospitalStay | Finds the length of a hospital stay at the baseline block |
| findClosestToBaseline | Finds the measurement date that is closest to baseline |
| findPrescriptionstAtBaseline | Finds the prescription information around the baseline visit |
| listAllAdherences | Helper function to call individual (one ATC code) adherence... |
| makeLong | Transform the time block results from wide to long format |
| noUseAtMissingBaseline | Set missing medication info at baseline and immediately after... |
| pdc_treatment | Calculates adherence to drug treatments based on the... |
| plotIndividualScore | Plot the score of an individual patient for all blocks (with... |
| readData | Read in a dataset |
| safe.ifelse | Type safe if.else implementation |
| visualiseOnePatientBinary | Creates a simple visualisation for serial and binary... |
