calculateFixedAdherenceList: Calculates medication adherence based on a fixed, specified...

In smm52/timeBlocks: Converts Serial Measurement Data into Longitudinal Trajectory of Equally-sized Time Blocks

Calculates medication adherence based on a fixed, specified refill time period

Description

Calculates medication adherence based on a fixed, specified refill time period

Usage

calculateFixedAdherenceList(
  serialDf,
  startDates = NA,
  endDates = NA,
  atcCodeList = c("C09", "C10"),
  refillPeriod = 90,
  stopPeriod = NA,
  idColumn = "PATIENT",
  dateColumn = "VISIT",
  atcColumn = "ATC",
  doPCAScore = F,
  combinedScore = T
)

Arguments

serialDf	the data frame with the serial data
startDates	dataframe with ID and a date to start the adherence calculation (optional)
endDates	dataframe with ID and a date to end the adherence calculation (optional)
refillPeriod	length of the refill period (default 90 days)
stopPeriod	number of days after which the medication is considered to have stopped (optional)
idColumn	name of ID column: default is PATIENT
dateColumn	name of date column: default is VISIT. This column has to be of class Date
atcColumn	name of the column with the ATC codes: default is ATC
doPCAScore	flag whether a PCA score from the medication data should be calculated
combinedScore	flag whether a combined PCA scores for all ATC codes in the list should be calculated
atcCode	list of regular expressions for the classes of medication ATC code (default: c('C09', 'C10'))

Value

time block data and dates in wide format

smm52/timeBlocks documentation built on Nov. 27, 2022, 3:54 a.m.