tests/testthat/_snaps/spiro_summary.md
In smnnlt/spiro: Manage Data from Cardiopulmonary Exercise Testing
stepwise summary works
step_number duration load VO2 VCO2 VE HR PetO2 PetCO2 VO2_rel
1 0 60 0.0 500.19 411.74 13.03 NA NA NA 7.58
2 1 300 2.0 1860.92 1585.75 39.87 NA NA NA 28.20
3 2 300 2.4 2097.82 1805.27 44.63 NA NA NA 31.79
4 3 300 2.8 2413.01 2122.17 52.63 NA NA NA 36.56
5 4 300 3.2 2710.68 2319.93 57.19 NA NA NA 41.07
6 5 300 3.6 3048.75 2684.87 67.45 NA NA NA 46.19
7 6 300 4.0 3404.02 3026.70 75.91 NA NA NA 51.58
8 7 300 4.4 3724.37 3383.64 88.36 NA NA NA 56.43
9 8 300 4.8 4223.82 3993.55 106.44 NA NA NA 64.00
10 9 300 5.2 4573.91 4488.36 127.54 NA NA NA 69.30
RE RER CHO FO
1 NA 0.82 0.27 0.15
2 234.97 0.85 1.27 0.46
3 220.73 0.86 1.51 0.49
4 217.62 0.88 1.95 0.48
5 213.91 0.86 1.89 0.65
6 213.86 0.88 2.47 0.60
7 214.90 0.89 2.90 0.62
8 213.75 0.91 3.50 0.56
9 222.21 0.95 4.68 0.37
10 222.12 0.98 5.82 0.12
step_number duration load VO2 VCO2 VE HR PetO2 PetCO2 VO2_rel
1 0.0 60 0.00 547.39 585.82 16.55 NA NA NA 8.29
2 0.5 120 2.80 2383.28 2165.22 54.17 NA NA NA 36.11
3 1.0 30 2.95 2368.57 2174.85 56.12 NA NA NA 35.89
4 2.0 30 3.10 2500.92 2267.64 57.12 NA NA NA 37.89
5 3.0 30 3.25 2642.22 2420.95 62.21 NA NA NA 40.03
6 4.0 30 3.40 2733.49 2429.99 61.08 NA NA NA 41.42
7 5.0 30 3.55 2906.27 2607.17 62.86 NA NA NA 44.03
8 6.0 30 3.70 2937.92 2730.87 68.05 NA NA NA 44.51
9 7.0 30 3.85 3057.89 2825.01 69.84 NA NA NA 46.33
10 8.0 30 4.00 3128.19 2910.31 72.35 NA NA NA 47.40
11 9.0 30 4.15 3358.05 3102.21 75.06 NA NA NA 50.88
12 10.0 30 4.30 3421.28 3195.42 78.60 NA NA NA 51.84
13 11.0 30 4.45 3656.19 3466.31 84.95 NA NA NA 55.40
14 12.0 30 4.60 3707.31 3572.52 86.48 NA NA NA 56.17
15 13.0 30 4.75 3843.92 3683.04 90.61 NA NA NA 58.24
16 14.0 30 4.90 4125.40 4044.04 100.25 NA NA NA 62.51
17 15.0 30 5.05 4181.26 4116.53 101.74 NA NA NA 63.35
18 16.0 30 5.20 4339.68 4314.96 107.98 NA NA NA 65.75
19 17.0 30 5.35 4433.75 4524.51 115.75 NA NA NA 67.18
20 18.0 30 5.50 4610.26 4669.10 121.60 NA NA NA 69.85
21 19.0 30 5.65 4729.04 4858.56 129.87 NA NA NA 71.65
22 20.0 30 5.80 4885.39 5062.96 137.60 NA NA NA 74.02
23 21.0 30 5.95 4990.24 5194.91 142.00 NA NA NA 75.61
24 22.0 30 6.10 4877.32 5128.64 144.21 NA NA NA 73.90
25 23.0 10 6.25 4393.91 4662.32 142.36 NA NA NA 66.57
RE RER CHO FO
1 NA 1.07 0.92 0.00
2 214.94 0.91 2.24 0.36
3 202.75 0.92 2.33 0.32
4 203.72 0.91 2.33 0.38
5 205.30 0.92 2.58 0.36
6 203.02 0.89 2.32 0.50
7 206.73 0.90 2.58 0.49
8 200.51 0.93 3.04 0.33
9 200.57 0.92 3.09 0.38
10 197.49 0.93 3.25 0.35
11 204.34 0.92 3.39 0.42
12 200.92 0.93 3.61 0.36
13 207.48 0.95 4.10 0.30
14 203.52 0.96 4.42 0.21
15 204.36 0.96 4.49 0.25
16 212.61 0.98 5.23 0.11
17 209.08 0.98 5.39 0.09
18 210.75 0.99 5.78 0.05
19 209.28 1.02 6.44 0.00
20 211.67 1.01 6.54 0.00
21 211.36 1.03 7.02 0.01
22 212.70 1.04 7.45 0.01
23 211.79 1.04 7.72 0.00
24 201.91 1.05 7.78 0.00
25 177.53 1.06 7.20 0.00
spiro_summary returns message when shortening interval
Code
spiro_summary(ramp_data, interval = 300)
Message
for load steps, interval was set to 30 seconds
for step 23, interval was set to length of step (10 seconds)
Output
step_number duration load VO2 VCO2 VE HR PetO2 PetCO2 VO2_rel
1 0.0 60 0.00 547.39 585.82 16.55 NA NA NA 8.29
2 0.5 120 2.80 2383.28 2165.22 54.17 NA NA NA 36.11
3 1.0 30 2.95 2368.57 2174.85 56.12 NA NA NA 35.89
4 2.0 30 3.10 2500.92 2267.64 57.12 NA NA NA 37.89
5 3.0 30 3.25 2642.22 2420.95 62.21 NA NA NA 40.03
6 4.0 30 3.40 2733.49 2429.99 61.08 NA NA NA 41.42
7 5.0 30 3.55 2906.27 2607.17 62.86 NA NA NA 44.03
8 6.0 30 3.70 2937.92 2730.87 68.05 NA NA NA 44.51
9 7.0 30 3.85 3057.89 2825.01 69.84 NA NA NA 46.33
10 8.0 30 4.00 3128.19 2910.31 72.35 NA NA NA 47.40
11 9.0 30 4.15 3358.05 3102.21 75.06 NA NA NA 50.88
12 10.0 30 4.30 3421.28 3195.42 78.60 NA NA NA 51.84
13 11.0 30 4.45 3656.19 3466.31 84.95 NA NA NA 55.40
14 12.0 30 4.60 3707.31 3572.52 86.48 NA NA NA 56.17
15 13.0 30 4.75 3843.92 3683.04 90.61 NA NA NA 58.24
16 14.0 30 4.90 4125.40 4044.04 100.25 NA NA NA 62.51
17 15.0 30 5.05 4181.26 4116.53 101.74 NA NA NA 63.35
18 16.0 30 5.20 4339.68 4314.96 107.98 NA NA NA 65.75
19 17.0 30 5.35 4433.75 4524.51 115.75 NA NA NA 67.18
20 18.0 30 5.50 4610.26 4669.10 121.60 NA NA NA 69.85
21 19.0 30 5.65 4729.04 4858.56 129.87 NA NA NA 71.65
22 20.0 30 5.80 4885.39 5062.96 137.60 NA NA NA 74.02
23 21.0 30 5.95 4990.24 5194.91 142.00 NA NA NA 75.61
24 22.0 30 6.10 4877.32 5128.64 144.21 NA NA NA 73.90
25 23.0 10 6.25 4393.91 4662.32 142.36 NA NA NA 66.57
RE RER CHO FO
1 NA 1.07 0.92 0.00
2 214.94 0.91 2.24 0.36
3 202.75 0.92 2.33 0.32
4 203.72 0.91 2.33 0.38
5 205.30 0.92 2.58 0.36
6 203.02 0.89 2.32 0.50
7 206.73 0.90 2.58 0.49
8 200.51 0.93 3.04 0.33
9 200.57 0.92 3.09 0.38
10 197.49 0.93 3.25 0.35
11 204.34 0.92 3.39 0.42
12 200.92 0.93 3.61 0.36
13 207.48 0.95 4.10 0.30
14 203.52 0.96 4.42 0.21
15 204.36 0.96 4.49 0.25
16 212.61 0.98 5.23 0.11
17 209.08 0.98 5.39 0.09
18 210.75 0.99 5.78 0.05
19 209.28 1.02 6.44 0.00
20 211.67 1.01 6.54 0.00
21 211.36 1.03 7.02 0.01
22 212.70 1.04 7.45 0.01
23 211.79 1.04 7.72 0.00
24 201.91 1.05 7.78 0.00
25 177.53 1.06 7.20 0.00
input is validated
'interval' must be greater or equal to 1
'quiet' must be either TRUE or FALSE
'exclude' must be either TRUE or FALSE
Data does not contain an exercise protocol
smnnlt/spiro documentation built on Feb. 23, 2025, 3:07 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
stepwise summary works
step_number duration load VO2 VCO2 VE HR PetO2 PetCO2 VO2_rel
1 0 60 0.0 500.19 411.74 13.03 NA NA NA 7.58
2 1 300 2.0 1860.92 1585.75 39.87 NA NA NA 28.20
3 2 300 2.4 2097.82 1805.27 44.63 NA NA NA 31.79
4 3 300 2.8 2413.01 2122.17 52.63 NA NA NA 36.56
5 4 300 3.2 2710.68 2319.93 57.19 NA NA NA 41.07
6 5 300 3.6 3048.75 2684.87 67.45 NA NA NA 46.19
7 6 300 4.0 3404.02 3026.70 75.91 NA NA NA 51.58
8 7 300 4.4 3724.37 3383.64 88.36 NA NA NA 56.43
9 8 300 4.8 4223.82 3993.55 106.44 NA NA NA 64.00
10 9 300 5.2 4573.91 4488.36 127.54 NA NA NA 69.30
RE RER CHO FO
1 NA 0.82 0.27 0.15
2 234.97 0.85 1.27 0.46
3 220.73 0.86 1.51 0.49
4 217.62 0.88 1.95 0.48
5 213.91 0.86 1.89 0.65
6 213.86 0.88 2.47 0.60
7 214.90 0.89 2.90 0.62
8 213.75 0.91 3.50 0.56
9 222.21 0.95 4.68 0.37
10 222.12 0.98 5.82 0.12
step_number duration load VO2 VCO2 VE HR PetO2 PetCO2 VO2_rel
1 0.0 60 0.00 547.39 585.82 16.55 NA NA NA 8.29
2 0.5 120 2.80 2383.28 2165.22 54.17 NA NA NA 36.11
3 1.0 30 2.95 2368.57 2174.85 56.12 NA NA NA 35.89
4 2.0 30 3.10 2500.92 2267.64 57.12 NA NA NA 37.89
5 3.0 30 3.25 2642.22 2420.95 62.21 NA NA NA 40.03
6 4.0 30 3.40 2733.49 2429.99 61.08 NA NA NA 41.42
7 5.0 30 3.55 2906.27 2607.17 62.86 NA NA NA 44.03
8 6.0 30 3.70 2937.92 2730.87 68.05 NA NA NA 44.51
9 7.0 30 3.85 3057.89 2825.01 69.84 NA NA NA 46.33
10 8.0 30 4.00 3128.19 2910.31 72.35 NA NA NA 47.40
11 9.0 30 4.15 3358.05 3102.21 75.06 NA NA NA 50.88
12 10.0 30 4.30 3421.28 3195.42 78.60 NA NA NA 51.84
13 11.0 30 4.45 3656.19 3466.31 84.95 NA NA NA 55.40
14 12.0 30 4.60 3707.31 3572.52 86.48 NA NA NA 56.17
15 13.0 30 4.75 3843.92 3683.04 90.61 NA NA NA 58.24
16 14.0 30 4.90 4125.40 4044.04 100.25 NA NA NA 62.51
17 15.0 30 5.05 4181.26 4116.53 101.74 NA NA NA 63.35
18 16.0 30 5.20 4339.68 4314.96 107.98 NA NA NA 65.75
19 17.0 30 5.35 4433.75 4524.51 115.75 NA NA NA 67.18
20 18.0 30 5.50 4610.26 4669.10 121.60 NA NA NA 69.85
21 19.0 30 5.65 4729.04 4858.56 129.87 NA NA NA 71.65
22 20.0 30 5.80 4885.39 5062.96 137.60 NA NA NA 74.02
23 21.0 30 5.95 4990.24 5194.91 142.00 NA NA NA 75.61
24 22.0 30 6.10 4877.32 5128.64 144.21 NA NA NA 73.90
25 23.0 10 6.25 4393.91 4662.32 142.36 NA NA NA 66.57
RE RER CHO FO
1 NA 1.07 0.92 0.00
2 214.94 0.91 2.24 0.36
3 202.75 0.92 2.33 0.32
4 203.72 0.91 2.33 0.38
5 205.30 0.92 2.58 0.36
6 203.02 0.89 2.32 0.50
7 206.73 0.90 2.58 0.49
8 200.51 0.93 3.04 0.33
9 200.57 0.92 3.09 0.38
10 197.49 0.93 3.25 0.35
11 204.34 0.92 3.39 0.42
12 200.92 0.93 3.61 0.36
13 207.48 0.95 4.10 0.30
14 203.52 0.96 4.42 0.21
15 204.36 0.96 4.49 0.25
16 212.61 0.98 5.23 0.11
17 209.08 0.98 5.39 0.09
18 210.75 0.99 5.78 0.05
19 209.28 1.02 6.44 0.00
20 211.67 1.01 6.54 0.00
21 211.36 1.03 7.02 0.01
22 212.70 1.04 7.45 0.01
23 211.79 1.04 7.72 0.00
24 201.91 1.05 7.78 0.00
25 177.53 1.06 7.20 0.00
spiro_summary returns message when shortening interval
Code
spiro_summary(ramp_data, interval = 300)
Message
for load steps, interval was set to 30 seconds
for step 23, interval was set to length of step (10 seconds)
Output
step_number duration load VO2 VCO2 VE HR PetO2 PetCO2 VO2_rel
1 0.0 60 0.00 547.39 585.82 16.55 NA NA NA 8.29
2 0.5 120 2.80 2383.28 2165.22 54.17 NA NA NA 36.11
3 1.0 30 2.95 2368.57 2174.85 56.12 NA NA NA 35.89
4 2.0 30 3.10 2500.92 2267.64 57.12 NA NA NA 37.89
5 3.0 30 3.25 2642.22 2420.95 62.21 NA NA NA 40.03
6 4.0 30 3.40 2733.49 2429.99 61.08 NA NA NA 41.42
7 5.0 30 3.55 2906.27 2607.17 62.86 NA NA NA 44.03
8 6.0 30 3.70 2937.92 2730.87 68.05 NA NA NA 44.51
9 7.0 30 3.85 3057.89 2825.01 69.84 NA NA NA 46.33
10 8.0 30 4.00 3128.19 2910.31 72.35 NA NA NA 47.40
11 9.0 30 4.15 3358.05 3102.21 75.06 NA NA NA 50.88
12 10.0 30 4.30 3421.28 3195.42 78.60 NA NA NA 51.84
13 11.0 30 4.45 3656.19 3466.31 84.95 NA NA NA 55.40
14 12.0 30 4.60 3707.31 3572.52 86.48 NA NA NA 56.17
15 13.0 30 4.75 3843.92 3683.04 90.61 NA NA NA 58.24
16 14.0 30 4.90 4125.40 4044.04 100.25 NA NA NA 62.51
17 15.0 30 5.05 4181.26 4116.53 101.74 NA NA NA 63.35
18 16.0 30 5.20 4339.68 4314.96 107.98 NA NA NA 65.75
19 17.0 30 5.35 4433.75 4524.51 115.75 NA NA NA 67.18
20 18.0 30 5.50 4610.26 4669.10 121.60 NA NA NA 69.85
21 19.0 30 5.65 4729.04 4858.56 129.87 NA NA NA 71.65
22 20.0 30 5.80 4885.39 5062.96 137.60 NA NA NA 74.02
23 21.0 30 5.95 4990.24 5194.91 142.00 NA NA NA 75.61
24 22.0 30 6.10 4877.32 5128.64 144.21 NA NA NA 73.90
25 23.0 10 6.25 4393.91 4662.32 142.36 NA NA NA 66.57
RE RER CHO FO
1 NA 1.07 0.92 0.00
2 214.94 0.91 2.24 0.36
3 202.75 0.92 2.33 0.32
4 203.72 0.91 2.33 0.38
5 205.30 0.92 2.58 0.36
6 203.02 0.89 2.32 0.50
7 206.73 0.90 2.58 0.49
8 200.51 0.93 3.04 0.33
9 200.57 0.92 3.09 0.38
10 197.49 0.93 3.25 0.35
11 204.34 0.92 3.39 0.42
12 200.92 0.93 3.61 0.36
13 207.48 0.95 4.10 0.30
14 203.52 0.96 4.42 0.21
15 204.36 0.96 4.49 0.25
16 212.61 0.98 5.23 0.11
17 209.08 0.98 5.39 0.09
18 210.75 0.99 5.78 0.05
19 209.28 1.02 6.44 0.00
20 211.67 1.01 6.54 0.00
21 211.36 1.03 7.02 0.01
22 212.70 1.04 7.45 0.01
23 211.79 1.04 7.72 0.00
24 201.91 1.05 7.78 0.00
25 177.53 1.06 7.20 0.00
input is validated
'interval' must be greater or equal to 1
'quiet' must be either TRUE or FALSE
'exclude' must be either TRUE or FALSE
Data does not contain an exercise protocol
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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