flanking_connections: plot_gene_connections

In smorabit/scicat:

Description

Plot cicero connections that flank the coordinates of a given gene in a given .gtf

Usage

flanking_connections(cur_gene, connections, gene_anno, bp_extend = 500,
  verbose = FALSE, ...)

Arguments

cur_gene	name of the gene you want to plot
connections	cicero connections with some extra columns
gene_anno	dataframe containing gtf info
bp_extend	number of basepairs to plot +- relevant peaks. Also the number of bp +- the gene to flank (may change this)
...	parameters passed to cicero plot_connections function

smorabit/scicat documentation built on July 23, 2020, 3:57 a.m.