RmbDefaultSettings: RMassBank settings
In sneumann/RMassBank: Workflow to process tandem MS files and build MassBank records

Description Usage Arguments Details Value Note Author(s) See Also Examples

Load, set and reset settings for RMassBank.

loadRmbSettings(file_or_list) 

loadRmbSettingsFromEnv(env = .GlobalEnv)

RmbDefaultSettings()

RmbSettingsTemplate(target)

`file_or_list`	The file (YML or R format) or R `list` with the settings to load.
`target`	The path where the template setting file should be stored.
`env`	The environment to load the settings from.

RmbSettingsTemplate creates a template file in which you can adjust the settings as you like. Before using RMassBank, you must then load the settings file using loadRmbSettings. RmbDefaultSettings loads the default settings. loadRmbSettingsFromEnv loads the settings stored in env$RmbSettings, which is useful when reloading archives with saved settings inside.

Note: no settings are loaded upon loading MassBank! This is intended, so that one never forgets to load the correct settings.

The settings are described in RmbSettings.

None.

The default settings will not work for you unless you have, by chance, installed OpenBabel into the same directory as I have!

Michael Stravs

RmbSettings

 # Create a standard settings file and load it (unedited)
	RmbSettingsTemplate("mysettings.ini")
 loadRmbSettings("mysettings.ini")
 unlink("mysettings.ini")