impGenotypeMatrix: Impute missing genotypes in incomplete genotype matrix
In sojwolf/ancientpca: A Probabilistic Approach to Conducting PCA with Sparse Genotype Data from Ancient Samples
Description
Usage
Arguments
Value
Description
Returns a matrix with imputed missing data in a 0,1,2 coded genotype matrix. Non-variance columns are automatically removed.
Usage
1
impGenotypeMatrix(genotype_matrix)
Arguments
genotype_matrix
Genotype matrix (sample x snps) coded with 0,1,2, or <NA>
Value
matrix (sample x snp) with genotype "probabilities" ranging from 0 to 2
sojwolf/ancientpca documentation built on May 13, 2019, 9:53 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Returns a matrix with imputed missing data in a 0,1,2 coded genotype matrix. Non-variance columns are automatically removed.
Usage
1 | impGenotypeMatrix(genotype_matrix)
|
Arguments
genotype_matrix |
Genotype matrix (sample x snps) coded with 0,1,2, or <NA> |
Value
matrix (sample x snp) with genotype "probabilities" ranging from 0 to 2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.