plot_enrich_ora: plot_enrich_ora

In soulong/bioTools: a bundle of tools faciliating RNAseq DGEs analysis, enrichment analysis

plot_enrich_ora

Description

dotplot for enrich result from enrich_ORA

Usage

plot_enrich_ora(
  enrichment,
  show_category = 10,
  plot_type = "dot",
  axis_x = "GeneRatio",
  order_by = "-log10(p.adjust)",
  color_by = "-log10(p.adjust)",
  color_range = c("blue2", "red2"),
  size_by = "Count",
  size_range = c(2, 6),
  text_len_limit = 40,
  facet_by = NULL,
  facet_scales = "free_y"
)

Arguments

enrichment	data.frame, from ORA enrichment, result can be merged from multi enrichment, grouping info can be viewed by facet
show_category	integer, show enriched category number
plot_type	character, one of dot, bar
axis_x	character, plot axis x by which column, one of GeneRatio, -log10(p.adjust), enrichFactor, Count
order_by	character, filter show_category by which column, one of GeneRatio, -log10(p.adjust), enrichFactor, Count
color_by	character, map point color, one of GeneRatio, -log10(p.adjust), enrichFactor, Count
color_range	two element character vector, mapping color range, from low to high
size_by	character, map point size, one of GeneRatio, -log10(p.adjust), enrichFactor, Count only works if plot_type is dot
size_range	two element numeric vector, mapping point size, from low to high only works if plot_type is dot
text_len_limit	integer, wrap y-axis text length
facet_by	character, facet plot by which column in enrichment
facet_scales	character, facet scales, one of free_y, free_x, free, fixed, only works if facet_by is not NULL

Value

ggplot2 object

soulong/bioTools documentation built on Aug. 23, 2023, 1:35 a.m.