README.md

In special-uor/embsecbio: Eastern Mediterranean-Black Sea-Caspian-Corridor Region

EMBSeCBIO

The goal of EMBSeCBIO is to provide functions to work with the Eastern Mediterranean-Black Sea-Caspian-Corridor region and biome reconstructions database.

Installation

You can(not) install the released version of EMBSeCBIO from CRAN with:

# install.packages("embsecbio")

And the development version from GitHub with:

# install.packages("devtools")
devtools::install_github("special-uor/embsecbio")

Example

Obtain the top 10 sites and their corresponding metadata:

`%>%` <- magrittr::`%>%`
embsecbio::site %>%
  dplyr::slice(1:10) %>%
  knitr::kable()

| ID_SITE | site_name | latitude | longitude | elevation | site_type | basin_size | catch_size | | -------: | :--------- | -------: | --------: | --------: | :-------------------------------------------- | :--------------------- | :---------------- | | 2 | Sakhare | 41.58 | 45.32 | 800 | lacustrine, playa | small (0.01-1 km2) | small (\<10 km2) | | 3 | Kumisi | 41.58 | 44.83 | 469 | lacustrine, natural open-water, tectonic lake | medium (1.1-50 km2) | small (\<10 km2) | | 4 | Tsavkisi | 41.68 | 44.72 | 1100 | terrestrial, mire, bog | small (0.01-1 km2) | small (\<10 km2) | | 5 | Imera | 41.65 | 44.22 | 1610 | terrestrial, mire, bog | small (0.01-1 km2) | small (\<10 km2) | | 6 | Aligol | 41.63 | 44.02 | 1550 | terrestrial, mire, bog | small (0.01-1 km2) | small (\<10 km2) | | 7 | Ispani-II | 41.87 | 41.80 | 2 | terrestrial, mire, bog, raised bog | medium (1.1-50 km2) | small (\<10 km2) | | 8 | Lake Urmia | 37.50 | 45.50 | 1297 | lacustrine, natural open-water | very large (>500 km2) | large (>500 km2) | | 9 | Adange | 43.31 | 41.33 | 1750 | fluvial | small (0.01-1 km2) | small (\<10 km2) | | 10 | Amtkel | 43.27 | 41.31 | 1830 | fluvial | small (0.01-1 km2) | small (\<10 km2) | | 11 | Gagra 471 | 43.28 | 40.27 | 0 | fluvial | small (0.01-1 km2) | small (\<10 km2) |

Obtain the top 10 entities and their corresponding metadata:

`%>%` <- magrittr::`%>%`
embsecbio::entity %>%
  dplyr::slice(1:10) %>%
  knitr::kable()

| ID_ENTITY | ID_SITE | entity_name | latitude | longitude | elevation | source | entity_type | mod_or_0ka_class | comments | | ---------: | -------: | :--------------- | -------: | --------: | --------: | :-------- | :----------------- | :------------------ | :--------------------- | | 2 | 2 | Sakhare core 1 | 41.58 | 45.32 | 800 | EMBSECBIO | core | PCT | if sample age = modern | | 3 | 3 | Kumisi core 1 | 41.58 | 44.83 | 469 | EMBSECBIO | core | PCT | if sample age = modern | | 4 | 4 | Tsavkisi core 1 | 41.68 | 44.72 | 1100 | EMBSECBIO | core | PCT | if sample age = modern | | 5 | 5 | Imera core 1 | 41.65 | 44.22 | 1610 | EMBSECBIO | core | PCT | if sample age = modern | | 6 | 6 | Aligol core 1 | 41.63 | 44.02 | 1550 | NOAA | core | PCT | if sample age = modern | | 7 | 7 | Ispani II core 1 | 41.87 | 41.80 | 2 | EMBSECBIO | peat core | PCT | if sample age = modern | | 8 | 8 | Urmia core 20 | 37.50 | 45.50 | 1297 | NOAA | core | PCT | if sample age = modern | | 9 | 9 | Adange core 1 | 43.31 | 41.33 | 1750 | NOAA | core | PCT | if sample age = modern | | 10 | 10 | Amtkel core 1 | 43.27 | 41.31 | 1830 | NOAA | core | PCT | if sample age = modern | | 11 | 11 | Gagra #471 | 43.28 | 40.27 | 0 | NOAA | profile or section | PCT | if sample age = modern |

Find entities linked to sites:

`%>%` <- magrittr::`%>%`
ents <- embsecbio::site %>%
  dplyr::slice(1:4) %>%
  embsecbio::get_entities()

ents %>%
  knitr::kable()

| ID_ENTITY | ID_SITE | entity_name | latitude | longitude | elevation | source | entity_type | mod_or_0ka_class | comments | | ---------: | -------: | :-------------- | -------: | --------: | --------: | :-------- | :-------------- | :------------------ | :--------------------- | | 2 | 2 | Sakhare core 1 | 41.58 | 45.32 | 800 | EMBSECBIO | core | PCT | if sample age = modern | | 3 | 3 | Kumisi core 1 | 41.58 | 44.83 | 469 | EMBSECBIO | core | PCT | if sample age = modern | | 4 | 4 | Tsavkisi core 1 | 41.68 | 44.72 | 1100 | EMBSECBIO | core | PCT | if sample age = modern | | 5 | 5 | Imera core 1 | 41.65 | 44.22 | 1610 | EMBSECBIO | core | PCT | if sample age = modern | | 1169 | 2 | Sakhare-2 | 41.58 | 45.32 | 800 | EMBSECBIO | surface sample | SS | NA | | 1170 | 2 | Sakhare-3 | 41.58 | 45.32 | 800 | EMBSECBIO | surface sample | SS | NA | | 1171 | 2 | Sakhare-4 | 41.58 | 45.32 | 800 | EMBSECBIO | surface sample | SS | NA | | 1172 | 3 | Kumisi-2 | 41.58 | 44.83 | 469 | EMBSECBIO | surface sample | SS | NA | | 1173 | 3 | Kumisi-3 | 41.58 | 44.83 | 469 | EMBSECBIO | surface sample | SS | NA | | 1174 | 3 | Kumisi-4 | 41.58 | 44.83 | 469 | EMBSECBIO | surface sample | SS | NA | | 1175 | 4 | Tsavkisi-1 | 41.68 | 44.72 | 1100 | EMBSECBIO | surface sample | SS | NA | | 1176 | 4 | Tsavkisi-2 | 41.68 | 44.72 | 1100 | EMBSECBIO | surface sample | SS | NA | | 1177 | 4 | Tsavkisi-3 | 41.68 | 44.72 | 1100 | EMBSECBIO | surface sample | SS | NA | | 1178 | 4 | Tsavkisi-4 | 41.68 | 44.72 | 1100 | EMBSECBIO | surface sample | SS | NA | | 1186 | 5 | Imera-1 | 41.65 | 44.22 | 1610 | EMBSECBIO | sediment sample | SS | NA | | 1187 | 5 | Imera-2 | 41.65 | 44.22 | 1610 | EMBSECBIO | sediment sample | SS | NA | | 1188 | 5 | Imera-3 | 41.65 | 44.22 | 1610 | EMBSECBIO | sediment sample | SS | NA | | 1189 | 5 | Imera-4 | 41.65 | 44.22 | 1610 | EMBSECBIO | sediment sample | SS | NA | | 1197 | 2 | Sakhare-1 | 41.58 | 45.32 | 800 | EMBSECBIO | surface sample | SS | NA |

Datasets

1. Harrison, Sandy and Marinova, Elena (2017): EMBSeCBIO modern pollen biomisation. University of Reading. Dataset. http://dx.doi.org/10.17864/1947.109

special-uor/embsecbio documentation built on Dec. 23, 2021, 4:26 a.m.