points.nebpath: Plot points for Nudged Elastic Band

In spiwokv/metadynminer: Tools to Read, Analyze and Visualize Metadynamics HILLS Files from 'Plumed'

Plot points for Nudged Elastic Band

Description

'points.nebpath' plots points for free energy profile calculated by Nudged Elastic Band.

Usage

## S3 method for class 'nebpath'
points(x, pch = NULL, cex = 1, bg = NULL,
  col = "red", lwd = 1, ...)

Arguments

x	nebpath object.
pch	plotting 'character', i.e., symbol to use. See 'points'.
cex	character (or symbol) expansion: a numerical vector. This works as a multiple of 'par("cex")'.
bg	background (fill) color for the open plot symbols given by 'pch = 21:25'.
col	color code or name, see 'par'.
lwd	line width for drawing symbols see 'par'.
...	further arguments passed to or from other methods.

Examples

tfes<-fes(acealanme, imax=5000)
minima<-fesminima(tfes)
nebAD<-neb(minima, min1="A", min2="D", nsteps=20)
plot(nebAD)
points(nebAD)

spiwokv/metadynminer documentation built on Dec. 3, 2023, 5:05 a.m.