metaxize: 'metaxize' converts Metaxa2 taxnomomy-reliability output...
In sponslerdb/metaxr:
Description
Usage
Arguments
Value
Description
metaxize converts Metaxa2 taxnomomy-reliability output files to a single tibble expressing proportional abundance of reads at a chosen taxonomic level and at a chosen reliability score cutoff
Usage
1
metaxize(x, tlev = "family", rscore = 60, regext = "CT\\d+")
Arguments
x
A filepath to a directory containing (only) taxonomy-reliability.txt files
tlev
A string specifying the taxonomic level at which results should be aggregated
rscore
A number between 0 and 100 specifying the relaiability score cutoff; only reads having a reliability score >= rscore will pass filter
Value
A tibble of sample-wise taxonomic proportions
sponslerdb/metaxr documentation built on May 25, 2019, 2:53 a.m.
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Description Usage Arguments Value
Description
metaxize converts Metaxa2 taxnomomy-reliability output files to a single tibble expressing proportional abundance of reads at a chosen taxonomic level and at a chosen reliability score cutoff
Usage
1 | metaxize(x, tlev = "family", rscore = 60, regext = "CT\\d+")
|
Arguments
x |
A filepath to a directory containing (only) taxonomy-reliability.txt files |
tlev |
A string specifying the taxonomic level at which results should be aggregated |
rscore |
A number between 0 and 100 specifying the relaiability score cutoff; only reads having a reliability score >= |
Value
A tibble of sample-wise taxonomic proportions
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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