combine_all_clicks: Dive-level acoustic and tag data, for one or more tags
In stacyderuiter/FBtagtools: Tools for working with FB SMRT (and Lander2) tag data

combine_all_clicks

R Documentation

Dive-level acoustic and tag data, for one or more tags

Description

Summarize SMRT (and/or Lander2) tag data on all clicks; add data on dive depth and sound exposure.

Usage

combine_all_clicks(
  tag_id = zc_smrt_tag_list,
  nc_path = getwd(),
  ae_path = getwd(),
  rl_file,
  ping_log_file,
  email,
  save_csv = TRUE,
  click_csv_name = "combined_zc_clicks.csv",
  buzz_csv_name = "combined_zc_buzzes.csv"
)

Arguments

`tag_id`	Character string or vector with tag IDs (without "-cal.nc"). Default: all SMRT/Lander2 ziphius tags.
`nc_path`	Directory (quoted string) where .nc files are stored. Can be one string, or a list the same length as tag_ids. Note: to download latest versions from Google drive, try function: `download_drive_nc`. Default: current working directory. Note: use "/" and not "\" to avoid headaches.
`ae_path`	Directory (quoted string) where text files with info about acoustic events are stored. If needed, you can use `download_drive_acoustic_events` to get these. Default is the current working directory.
`rl_file`	name (with path, if needed) of locally-stored .csv file with raw RL data. If not provided, the default is to use `download_drive_rls` to obtain it from the FB Google Drive.
`ping_log_file`	name (with path, if needed) of locally-stored .csv file with raw RL data. If not provided, the default is to use `download_drive_rls` to obtain it from the FB Google Drive.
`email`	Email address (required for FB Google Drive authentication; optional if `rl_file` is provided). You may also be asked to sign in or verify your Google identity as this function runs.
`save_csv`	Logical; whether or not to save a csv file with the results. Default: TRUE (and will overwrite any existing file)
`click_csv_name`	File name (with path, if desired) in which to save results in csv format. Default is combined_zc_clicks.csv.
`buzz_csv_name`	File name for buzz file. Default combined_zc_buzzes.csv