Miscellaneous Functions from M. Kohl

0MKmisc-package | Miscellaneous Functions from M. Kohl. |

AUC | Compute AUC |

AUCtest | AUC-Test |

binomCI | Confidence Intervals for Binomial Proportions |

corDist | Correlation Distance Matrix Computation |

corPlot | Plot of similarity matrix based on correlation |

fiveNS | Five-Number Summaries |

glog | Compute Generalized Logarithm |

heatmapCol | Generate colors for heatmaps |

HLgofTest | Hosmer-Lemeshow goodness of fit tests. |

IQrange | The Interquartile Range |

madMatrix | Compute MAD between colums of a matrix or data.frame |

madPlot | Plot of similarity matrix based on MAD |

melt.long | Transform data.frame to Long Form |

mi.t.test | Multiple Imputation Student's t-Test |

normCI | Confidence Intervals for Mean and Standard Deviation |

oneWayAnova | A function for Analysis of Variance |

optCutoff | Compute the Optimal Cutoff for Binary Classification |

or2rr | Transform OR to RR |

pairwiseAUC | Compute pairwise AUCs |

pairwiseFC | Compute pairwise fold changes |

pairwiseFun | Compute pairwise values for a given function |

pairwiselogFC | Compute pairwise log-fold changes |

perfMeasures | Compute Performance Measures for Binary Classification |

power.diagnostic.test | Power calculations for a diagnostic test |

power.nb.test | Power calculation for comparing two negative binomial rates |

predValues | Compute PPV and NPV. |

print.confint | Print Method for Confidence Intervals |

qboxplot | Box Plots |

qbxp.stats | Box Plot Statistics |

quantileCI | Confidence Intervals for Quantiles |

repMeans | Compute mean of replicated spots |

risks | Compute RR, OR, etc. |

rrCI | Compute Approximate Confidence Interval for RR. |

simCorVars | Simulate correlated variables. |

simPlot | Plot of a similarity matrix. |

ssize.pcc | Sample Size Planning for Developing Classifiers Using High... |

stringDist | Function to compute distances between strings |

stringSim | Function to compute similarity scores between strings |

thyroid | Plot TSH, fT3 and fT4 with respect to reference range. |

traceBack | Function to trace back |

transformations | New Transformations for Use with ggplot2 Package |

twoWayAnova | A function for Analysis of Variance |

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