Man pages for stan-dev/cmdstanr
R Interface to 'CmdStan'
| as_draws.CmdStanMCMC | Create a 'draws' object from a CmdStanR fitted model object |
| as_mcmc.list | Convert 'CmdStanMCMC' to 'mcmc.list' |
| cmdstan_coercion | Coercion methods for CmdStan objects |
| cmdstan_default_install_path | cmdstan_default_install_path |
| cmdstan_default_path | cmdstan_default_path |
| CmdStanDiagnose | CmdStanDiagnose objects |
| CmdStanGQ | CmdStanGQ objects |
| CmdStanLaplace | CmdStanLaplace objects |
| CmdStanMCMC | CmdStanMCMC objects |
| CmdStanMLE | CmdStanMLE objects |
| cmdstan_model | Create a new CmdStanModel object |
| CmdStanModel | CmdStanModel objects |
| CmdStanPathfinder | CmdStanPathfinder objects |
| cmdstanr_example | Fit models for use in examples |
| cmdstanr_global_options | CmdStanR global options |
| cmdstanr-package | CmdStanR: the R interface to CmdStan |
| CmdStanVB | CmdStanVB objects |
| draws_to_csv | Write posterior draws objects to CSV files suitable for... |
| eng_cmdstan | CmdStan knitr engine for Stan |
| fit-method-cmdstan_summary | Run CmdStan's 'stansummary' and 'diagnose' utilities |
| fit-method-code | Return Stan code |
| fit-method-constrain_variables | Transform a set of unconstrained parameter values to the... |
| fit-method-diagnostic_summary | Sampler diagnostic summaries and warnings |
| fit-method-draws | Extract posterior draws |
| fit-method-gradients | Extract gradients after diagnostic mode |
| fit-method-grad_log_prob | Calculate the log-probability and the gradient w.r.t. each... |
| fit-method-hessian | Calculate the log-probability , the gradient w.r.t. each... |
| fit-method-init | Extract user-specified initial values |
| fit-method-init_model_methods | Compile additional methods for accessing the model... |
| fit-method-inv_metric | Extract inverse metric (mass matrix) after MCMC |
| fit-method-log_prob | Calculate the log-probability given a provided vector of... |
| fit-method-loo | Leave-one-out cross-validation (LOO-CV) |
| fit-method-lp | Extract log probability (target) |
| fit-method-metadata | Extract metadata from CmdStan CSV files |
| fit-method-mle | Extract point estimate after optimization |
| fit-method-num_chains | Extract number of chains after MCMC |
| fit-method-output | Access console output |
| fit-method-profiles | Return profiling data |
| fit-method-return_codes | Extract return codes from CmdStan |
| fit-method-sampler_diagnostics | Extract sampler diagnostics after MCMC |
| fit-method-save_object | Save fitted model object to a file |
| fit-method-save_output_files | Save output and data files |
| fit-method-summary | Compute a summary table of estimates and diagnostics |
| fit-method-time | Report timing of CmdStan runs |
| fit-method-unconstrain_draws | Transform all parameter draws to the unconstrained scale |
| fit-method-unconstrain_variables | Transform a set of parameter values to the unconstrained... |
| fit-method-variable_skeleton | Return the variable skeleton for 'relist' |
| install_cmdstan | Install CmdStan or clean and rebuild an existing installation |
| model-method-check_syntax | Check syntax of a Stan program |
| model-method-compile | Compile a Stan program |
| model-method-diagnose | Run Stan's diagnose method |
| model-method-expose_functions | Expose Stan functions to R |
| model-method-format | Run stanc's auto-formatter on the model code. |
| model-method-generate-quantities | Run Stan's standalone generated quantities method |
| model-method-laplace | Run Stan's Laplace algorithm |
| model-method-optimize | Run Stan's optimization algorithms |
| model-method-pathfinder | Run Stan's Pathfinder Variational Inference Algorithm |
| model-method-sample | Run Stan's MCMC algorithms |
| model-method-sample_mpi | Run Stan's MCMC algorithms with MPI |
| model-method-variables | Input and output variables of a Stan program |
| model-method-variational | Run Stan's variational approximation algorithms |
| read_cmdstan_csv | Read CmdStan CSV files into R |
| read_sample_csv | Read CmdStan CSV files from sampling into R |
| register_knitr_engine | Register CmdStanR's knitr engine for Stan |
| set_cmdstan_path | Get or set the file path to the CmdStan installation |
| stan_threads | Set or get the number of threads used to execute Stan models |
| write_stan_file | Write Stan code to a file |
| write_stan_json | Write data to a JSON file readable by CmdStan |
| write_stan_tempfile | Write Stan code to a temporary file |
