cran-comments.md

In statimagcoll/RESI: Robust Effect Size Index (RESI) Estimation

Test Environments

• local R installation, version 4.3.1
• rhub::check_for_cran()
• win-builder

R CMD check results

There were no ERRORs, WARNINGs, or NOTEs.

CRAN Submission 1.2.4

This is the same as submission 1.2.1/1.2.2/1.2.3 which did not pass incoming checks due to installation CPU time surpassing elapsed time. I removed the RESIsetup.R file because it did not solve the issue. I copied the one function we use from the regtools package to internal_functions.R and moved regtools to the Suggests field rather than imports, as regtools relies on data.table and may use more than 2 threads.

Words flagged by spell_check are not misspelled.

Downstream dependencies

There are currently no downstream dependencies for this package.

Previous cran-comments

Test Environments

• local R installation, version 4.3.1
• rhub::check_for_cran()
• win-builder

R CMD check results

There were no ERRORs, WARNINGs, or NOTEs.

CRAN Submission 1.2.3

This is the same as submission 1.2.1/1.2.2 which did not pass incoming checks due to CPU time surpassing elapsed time. I have attempted to fix this by changing the function in the RESIsetup.R file to Sys.setenv("OMP_THREAD_LIMIT" = 1) and added this line to the RESI.Rmd vignette as well.

Words flagged by spell_check are not misspelled.

Downstream dependencies

There are currently no downstream dependencies for this package.

Test Environments

• local R installation, version 4.3.1
• rhub::check_for_cran()
• win-builder

R CMD check results

There were no ERRORs, WARNINGs, or NOTEs.

CRAN Submission 1.2.2

This is the same as submission 1.2.1 which did not pass incoming checks due to CPU time surpassing elapsed time. This has been addressed by adding a function in the RESIsetup.R file to set Sys.setenv("OMP_THREAD_LIMIT" = 2).

Words flagged by spell_check are not misspelled.

Downstream dependencies

There are currently no downstream dependencies for this package.

Test Environments

• local R installation, version 4.3.1
• rhub::check_for_cran()
• win-builder

R CMD check results

There were no ERRORs, WARNINGs, or NOTEs.

CRAN Submission 1.2.1

This update makes minor bug fixes and documentation fixes in response to reviewer comments received after submitting a manuscript regarding the package to the Journal of Statistical Software. The documentation for f2S and plot.resi have been edited slightly. The README has been updated with details for how to contribute to the package or report errors. A pkgdown website has been deployed.

Words flagged by spell_check are not misspelled.

Downstream dependencies

There are currently no downstream dependencies for this package.

Test Environments

• local R installation, version 4.2.2
• rhub::check_for_cran()
• win-builder

R CMD check results

There were no ERRORs, WARNINGs, or NOTEs.

CRAN Submission 1.2.0

This update reworks the package to address initial comments received after submitting a manuscript regarding the package to the Journal of Statistical Software. The main functions, resi and resi_pe have been reworked to minimize code duplication. The bootstrapping is now handled via the boot package, with an added internal function resi_stat to compute the estimates. t2S_alt and t2S were collapsed into one function (similarly for z2S and z2S_alt). An omnibus function was added to extract the overall Wald test from a resi object. The plotting methods have been improved and ggplot methods have been added. The methods for gee and geeglm were updated based on ongoing theoretical work. A bug that was causing an error in resi on models containing only one predictor was resolved.

Words flagged by spell_check are not misspelled.

Downstream dependencies

There are currently no downstream dependencies for this package.

Test Environments

• local R installation, version 4.2.2
• rhub::check_for_cran()
• win-builder

R CMD check results

There were no ERRORs, WARNINGs, or NOTEs.

CRAN Submission 1.1.1

This update changes "object" to "mod" in Anova.resi for S3 method consistency with car::Anova, based on warning that was was given by CRAN's package check and makes a minor change to resi.geeglm.

Words flagged by spell_check are not misspelled.

Downstream dependencies

There are currently no downstream dependencies for this package.

Test Environments

• local R installation, version 4.2.2
• rhub::check_for_cran()
• win-builder

R CMD check results

There were no ERRORs, WARNINGs, or NOTEs.

CRAN Submission 1.1.0

This is an update that expands the RESI estimation for longitudinal models and corrects several minor errors and bugs. There was a slight formula change in the f2S and t2S_alt function. The regtools package has been moved from Imports to Suggests for the moment due to receiving a notice of a downstream dependency issue regarding the float package. The one function used from that package is currently copied into the internal_functions.R here with comments in the code.

Words flagged by spell_check are not misspelled.

Downstream dependencies

There are currently no downstream dependencies for this package.

Test Environments

• local R installation, version 4.1.2
• rhub::check_for_cran()
• win-builder

R CMD check results

There were no ERRORs or WARNINGs. There was one NOTE, that this is a new submission and some words are possibly misspelled. The words flagged are names and spelled correctly.

CRAN Submission 1.0.5

Based on feedback received, for submission 1.0.5 I have: removed redundant "Tools to" in Description of DESCRIPTION corrected the format of the reference in Description of DESCRIPTION

For submission 1.0.4, I have: * removed a few of the tests that require many iterations for model types that are most similar to other methods being tested. I have also reduced the number of iterations in other tests.

For submission 1.0.3, I have: * fixed a typo in function documentation

For submission 1.0.2, after failing the incoming checks I have: * removed two tests that check for the estimates being in between the confidence interval limits for geeglm and lme models. The interval methods for the longitudinal models in this package have not been evaluated for performance and there are already warnings when producing intervals for these models. Since there is already a disclaimer for this, these tests have been removed.

For submission 1.0.1, after failing the incoming checks I have: * shortened the time it take the examples in resi.R to run

Downstream dependencies

There are currently no downstream dependencies for this package.

statimagcoll/RESI documentation built on Sept. 23, 2024, 12:13 a.m.