plot.conc_microsim: Plot Values from a Concurrency Microsimulation Model

In statnet/concurrency.sim: Microsimulation Model for Sexual Partnership Concurrency on HIV-1 Transmission Dynamics

Description

Plots values from an concurrency microsimulation epidemic model simulated with conc_microsim.

Usage

## S3 method for class 'conc_microsim'
plot(x, sim.lines = FALSE, sim.alpha = 0.5,
  mean.line = TRUE, mean.smooth = TRUE, mean.lwd = 3, qnts = 0.5,
  qnt.alpha = 0.3, qnts.smooth = TRUE, xlim, ylim, ...)

Arguments

x	Object of class conc_microsim.
sim.lines	If TRUE, plot individual simulation lines.
sim.alpha	Transparency level for simulation lines, where 0 = transparent and 1 = opaque (see adjustcolor function).
mean.line	If TRUE, plot the row means of the simulation lines.
mean.smooth	If TRUE, smooth the mean line.
mean.lwd	Line width for mean line.
qnts	If TRUE, plot quantile polygon for specified range.
qnt.alpha	Transparency level for quantile band, similiarly specified to sim.alpha.
qnts.smooth	If TRUE, smooth the quantile band.
xlim	x-axis scale limits for plot, with default based on model time steps.
ylim	y-axis scale limits for plot, with default based on range of simulated data.
...	Additional arguments (not used)

Details

This function plots the disease prevalence from an conc_microsim model. The function is currently limited to individual simulation lines of disease prevalence.

statnet/concurrency.sim documentation built on Aug. 10, 2020, 2:33 a.m.