Files in stcolema/mdiHelpR

Helper Functions for Analysis of Sampling-Based Clustering Methods

R/RcppExports.R R/annotatedHeatmap.R R/arandi4Apply.R R/autoCorrelationPlot.R R/averageMatrix.R R/calcPSMEntries.R R/combinePheatmaps.R R/compareColForPSM.R R/compareHeatmapPSMandData.R R/compareHeatmapPSMandDataCor.R R/compareHeatmaps.R R/compareMatrices.R R/compareMatricesGen.R R/compareSimilarityMatrices.R R/compareSimilarityMatricesAnnotated.R R/constructPSM.R R/constructSymmertix.R R/createParameterNames.R R/dataColPal.R R/defineBreaks.R R/defineDataBreaks.R R/drawLegend.R R/extractNumericalFromString.R R/findBurnIn.R R/findESS.R R/findOrder.R R/gelmanDF.R R/gelmanPlot.R R/gelmanValues.R R/generateGaussianDataset.R R/generateSimulationDataset.R R/gewekePlot.R R/heatmapWrapperPSMDataCorr.R R/makeARIMatrices.R R/makeESSPlots.R R/makePSM.R R/mdiCall.R R/pcaPlot.R R/pcaSeriesPlot.R R/pipe.R R/plotComparisonCorrelationPSMData.R R/plotComparisonData2Clustering.R R/plotPhiDensities.R R/plotPhiHistograms.R R/plotPhiSeries.R R/plotSummaryStats.R R/saveAutoCorrelationPlots.R R/saveGewekePlots.R R/setMyTheme.R R/show.R R/simColPal.R R/stringMutate.R R/summaryDF.R README.md man/annotatedHeatmap.Rd man/arandi4Apply.Rd man/autoCorrelationPlot.Rd man/averageMatrix.Rd man/calcPSMEntries.Rd man/combinePheatmaps.Rd man/compareColForPSM.Rd man/compareHeatmapPSMandData.Rd man/compareHeatmaps.Rd man/compareMatrices.Rd man/compareMatricesGen.Rd man/compareSimilarityMatrices.Rd man/compareSimilarityMatricesAnnotated.Rd man/constructPSM.Rd man/constructSymmetrix.Rd man/createParameterNames.Rd man/createSimilarityMat.Rd man/dataColPal.Rd man/defineBreaks.Rd man/defineDataBreaks.Rd man/draw_legend.Rd man/extractNumericalFromString.Rd man/findBurnIn.Rd man/findESS.Rd man/findOrder.Rd man/gelmanDF.Rd man/gelmanPlot.Rd man/gelmanValues.Rd man/generateGaussianDataset.Rd man/generateSimulationDataset.Rd man/gewekePlot.Rd man/heatmapWrapperPSMDataCorr.Rd man/makeARIMatrices.Rd man/makeESSPlots.Rd man/makePSM.Rd man/mdiHelpR-package.Rd man/pcaPlot.Rd man/pcaSeriesPlot.Rd man/pipe.Rd man/plotComparisonCorrelationPSMData.Rd man/plotComparisonData2Clustering.Rd man/plotPhiDensities.Rd man/plotSummaryStats.Rd man/quickPSM.Rd man/runMDI.Rd man/setMyTheme.Rd man/show.Rd man/simColPal.Rd man/stringMutate.Rd man/summaryDF.Rd