autoCorrelationPlot: Auto-correlation plot

In stcolema/mdiHelpR: Helper Functions for Analysis of Sampling-Based Clustering Methods

Auto-correlation plot

Description

Makes an auto-correlation plot as per the coda package, but in the ggplot2 environment rather than base R.

Usage

autoCorrelationPlot(
  x,
  plot_title = "autocorrelation",
  lag_max = NULL,
  facet = FALSE,
  threshold_line_colour = "grey"
)

Arguments

x	An mcmc chain.
plot_title	The plot title.
lag_max	The maximum lag for which to calculate auto-correlation. Defaults to 50.
facet	A logical instructing the plotting of the autocorrelaiton plots of the parameters as facetted upon parameter or else combined in one plot and separated by colour.

Value

A plot of the auto-correlation for each parameter in x over a number of lag values.

stcolema/mdiHelpR documentation built on July 28, 2024, 5:41 a.m.