Man pages for stcolema/mdiHelpR
Helper Functions for Analysis of Sampling-Based Clustering Methods
| annotatedHeatmap | Annotated heatmap |
| arandi4Apply | Arandi 4 apply |
| autoCorrelationPlot | Auto-correlation plot |
| averageMatrix | Average matrix |
| calcPSMEntries | PSM entries |
| combinePheatmaps | Combine Pheatmaps |
| compareColForPSM | Compare col for PSM |
| compareHeatmapPSMandData | compareHeatmapPSMandData |
| compareHeatmaps | Compare heatmaps |
| compareMatrices | Compare matrices |
| compareMatricesGen | Compare matrices |
| compareSimilarityMatrices | Compare similarity matrices |
| compareSimilarityMatricesAnnotated | Compare similarity matrices with annotation |
| constructPSM | Construct PSM |
| constructSymmetrix | Construct symmetrix |
| createParameterNames | Create parameter names |
| createSimilarityMat | Create Similarity Matrix |
| dataColPal | data colour palette |
| defineBreaks | defineBreaks |
| defineDataBreaks | defineDataBreaks |
| draw_legend | Draw legend |
| extractNumericalFromString | Extract numerical from string |
| findBurnIn | Find burn-in |
| findESS | find ESS |
| findOrder | Find order |
| gelmanDF | Gelman data frame |
| gelmanPlot | gelman plot |
| gelmanValues | Gelman values |
| generateGaussianDataset | Generate Gaussian dataset |
| generateSimulationDataset | Generate simulation dataset |
| gewekePlot | Geweke plot |
| heatmapWrapperPSMDataCorr | Heatmap Wrapper PSM, Data, Corr |
| makeARIMatrices | Make Arandi Matrices |
| makeESSPlots | Make ESS plots |
| makePSM | Make PSM |
| mdiHelpR-package | Helper Functions for Analysis of Sampling-Based Clustering... |
| pcaPlot | PCA plot |
| pcaSeriesPlot | PCA series plot |
| pipe | Pipe operator |
| plotComparisonCorrelationPSMData | Plot comparison correlation PSM data |
| plotComparisonData2Clustering | Plot comparison expression to clustering |
| plotPhiDensities | Plot Phi densities |
| plotSummaryStats | Plot Summary Stats |
| quickPSM | Quick PSM |
| runMDI | Run MDI |
| setMyTheme | Set my theme |
| show | Show |
| simColPal | data colour palette |
| stringMutate | string mutate |
| summaryDF | Summary data.frame |
