README.md

In steffenhartmeyer/spectrace: Functions for importing and processing raw Spectrace output

spectrace

The goal of spectrace is to provide functions to import raw Spectrace data and calculate relevant quantities.

Installation

You can install the released version of spectrace using:

remotes::install_github("steffenhartmeyer/spectrace")

Example

This is a basic example which shows you how to use the functions:

library(spectrace)

# Paths to example data
light_data = system.file("extdata", "example_light.csv", package = "spectrace")

# Import raw spectrace light data
data.raw = spectrace_import_light(light_data, 
                                  tz = "Europe/Berlin", 
                                  serial_number = "208731924656")

# Calibrate raw light data with default calibration data
data.cal = spectrace_calibrate_light(data.raw)

## Not run:
# Calibrate raw light data with custom calibration data
data.cal2 = spectrace_calibrate_light(data.raw, cal_data = custom_calibration)
## End(**Not run**)

# Calculate all quantities 
data.quantities = spectrace_calculate_quantities(data.cal)

# Calculate only specific quantities
data.quantities.2 = spectrace_calculate_quantities(data.cal, c("melEDI", "CCT"))

# Interpolate spectra to 5nm resolution
data.spectra = spectrace_interpolate_spectra(data.cal)

steffenhartmeyer/spectrace documentation built on Dec. 4, 2024, 4:13 p.m.