README.md

In steinbaugh/Chromium: 10X Genomics Chromium

Chromium

Toolkit for 10X Genomics Chromium single cell data.

Installation

R method

if (!requireNamespace("BiocManager", quietly = TRUE)) {
    install.packages("BiocManager")
}
install.packages(
    pkgs = "Chromium",
    repos = c(
        "https://r.acidgenomics.com",
        BiocManager::repositories()
    )
)

Docker method

image='acidgenomics/r-packages:chromium'
workdir='/mnt/work'
docker pull "$image"
docker run -it \
    --volume="${PWD}:${workdir}" \
    --workdir="$workdir" \
    "$image" \
    R

steinbaugh/Chromium documentation built on June 25, 2022, 2:38 p.m.