tmm: Trimmed mean of M-values

tmmR Documentation

Trimmed mean of M-values

Description

TMM normalization is recommended for RNA-seq data generally when the majority of genes are not differentially expressed.

Usage

tmm(object, ...)

Arguments

object

Object.

...

Additional arguments.

Value

matrix.

Note

Only recommended for gene-level counts.

References

Robinson and Oshlack (2010).

See Also

  • edgeR::calcNormFactors().

  • edgeR::cpm().

Examples

showMethods("tmm")

steinbaugh/bioverbs documentation built on April 11, 2025, 9:01 p.m.