| .filterPromiscuousMarkers |
Source code
|
| .getSeuratStash |
Source code
|
| .group |
Source code
|
| .plotPcElbow |
Source code
|
| .seuratCommand |
Source code
|
| .seuratCommandParam |
Source code
|
| .seuratNormalizationMethod |
Source code
|
| .seuratScaleFactor |
Source code
|
| .seuratWhichIdents |
Source code
|
| GeneToSymbol,Seurat-method |
Man page
|
| KnownMarkers |
Man page
|
| KnownMarkers,SeuratMarkersPerCluster,CellTypeMarkers-method |
Man page
|
| SeuratMarkers |
Man page
|
| SeuratMarkers,data.frame-method |
Man page
|
| SeuratMarkers-class |
Man page
|
| SeuratMarkersPerCluster |
Man page
|
| SeuratMarkersPerCluster,data.frame-method |
Man page
|
| SeuratMarkersPerCluster-class |
Man page
|
| as.Seurat |
Man page
|
| as.Seurat,SingleCellExperiment-method |
Man page
|
| as.SingleCellExperiment |
Man page
|
| as.SingleCellExperiment,Seurat-method |
Man page
|
| assay,Seurat,ANY-method |
Man page
|
| assayNames,Seurat-method |
Man page
|
| assays,Seurat-method |
Man page
|
| base-Seurat |
Man page
|
| cellCountsPerCluster,Seurat-method |
Man page
|
| clusters,Seurat-method |
Man page
|
| coerce |
Man page
|
| coerce,Seurat,RangedSummarizedExperiment-method |
Man page
|
| coerce,Seurat,SingleCellExperiment-method |
Man page
|
| coerce,Seurat,SummarizedExperiment-method |
Man page
|
| coerce,SingleCellExperiment,Seurat-method |
Man page
|
| colData,Seurat-method |
Man page
|
| colData<-,Seurat,DFrame-method |
Man page
|
| counts,Seurat-method |
Man page
|
| cpm,Seurat-method |
Man page
|
| diffExp,Seurat-method |
Man page
|
| diffExpPerCluster,Seurat-method |
Man page
|
| findMarkers,Seurat-method |
Man page
|
| interestingGroups,Seurat-method |
Man page
|
| interestingGroups<-,Seurat,character-method |
Man page
|
| logcounts,Seurat-method |
Man page
|
| mapGenesToIds,Seurat-method |
Man page
|
| mapGenesToRownames,Seurat-method |
Man page
|
| mapGenesToSymbols,Seurat-method |
Man page
|
| metadata,Seurat-method |
Man page
|
| metadata<-,Seurat-method |
Man page
|
| metrics,Seurat-method |
Man page
|
| normalize,Seurat-method |
Man page
|
| normcounts,Seurat-method |
Man page
|
| organism,Seurat-method |
Man page
|
| organism<-,Seurat-method |
Man page
|
| plotCellCountsPerCluster,Seurat-method |
Man page
|
| plotCellTypesPerCluster,Seurat,KnownMarkers-method |
Man page
|
| plotCounts,Seurat-method |
Man page
|
| plotDots,Seurat-method |
Man page
|
| plotFeature,Seurat-method |
Man page
|
| plotKnownMarkers,Seurat,KnownMarkers-method |
Man page
|
| plotMarker,Seurat-method |
Man page
|
| plotPcElbow |
Man page
|
| plotPcElbow,Seurat-method |
Man page
|
| plotPca,Seurat-method |
Man page
|
| plotReducedDim,Seurat-method |
Man page
|
| plotStackedBarPlot,Seurat-method |
Man page
|
| plotTopMarkers |
Man page
|
| plotTopMarkers,Seurat,SeuratMarkersPerCluster-method |
Man page
|
| plotTsne,Seurat-method |
Man page
|
| plotUmap,Seurat-method |
Man page
|
| plotViolin,Seurat-method |
Man page
|
| pointillism |
Man page
|
| pointillism-package |
Man page
|
| reducedDim,Seurat,ANY-method |
Man page
|
| reducedDimNames,Seurat-method |
Man page
|
| reducedDims,Seurat-method |
Man page
|
| rowData,Seurat-method |
Man page
|
| rowRanges,Seurat-method |
Man page
|
| rowRanges<-,Seurat,ANY-method |
Man page
|
| runSeurat |
Man page
|
| runSeurat,Seurat-method |
Man page
|
| runSeurat,SingleCellExperiment-method |
Man page
|
| sampleData,Seurat-method |
Man page
|
| sampleData<-,Seurat,DFrame-method |
Man page
|
| sampleNames,Seurat-method |
Man page
|
| summary |
Man page
|
| summary,SeuratMarkers-method |
Man page
|
| summary,SeuratMarkersPerCluster-method |
Man page
|
| topMarkers |
Man page
|
| topMarkers,SeuratMarkersPerCluster-method |
Man page
|
