as.Seurat: Coerce object to Seurat

In steinbaugh/pointillism: Single-cell RNA-seq toolkit

Coerce object to Seurat

Description

Coerce object to Seurat

Usage

as.Seurat(x, ...)

## S4 method for signature 'SingleCellExperiment'
as.Seurat(x)

Arguments

x	Object.
...	Additional arguments.

Details

Note that Seurat::as.Seurat() method requires logcounts to be defined in assays(), so we're using CreateSeuratObject() here instead.

Value

Seurat.

Note

Updated 2023-10-04.

See Also

• Seurat::CreateSeuratObject().

• Seurat::as.Seurat().

Examples

data(SingleCellExperiment_Seurat, package = "AcidTest")

## SingleCellExperiment to Seurat ====
from <- SingleCellExperiment_Seurat
to <- as.Seurat(from)
class(to)
print(to)

steinbaugh/pointillism documentation built on Oct. 13, 2023, 10:43 p.m.