API for steinbaugh/seqcloudr
Base Functions for Bioinformatics

Global functions
%$% Man page
%<>% Man page
%>% Man page
%T>% Man page
%in% Man page
Annotated-class Man page
AsIs-class Man page
AtomicList-class Man page
CharacterList Man page
CharacterList-class Man page
DataFrame Man page
DataFrame-class Man page
DataFrameList Man page
DataFrameList-class Man page
Ensembl2Entrez Man page
Ensembl2Entrez-class Man page
EnsemblGenes-class Man page
EnsemblTranscripts-class Man page
Entrez2Ensembl Man page
Entrez2Ensembl-class Man page
EntrezGeneInfo Man page
EntrezGeneInfo-class Man page
Factor-class Man page
FactorList Man page
FactorList-class Man page
FlyBaseGenes-class Man page
FlyBaseTranscripts-class Man page
GRanges Man page
GRanges-class Man page
GRangesList Man page
GRangesList-class Man page
GencodeGenes-class Man page
GencodeTranscripts-class Man page
Gene2Symbol Man page
Gene2Symbol-class Man page
HGNC Man page
HGNC-class Man page
HGNC2Ensembl Man page
HGNC2Ensembl-class Man page
IRanges Man page
IRanges-class Man page
IntegerList Man page
IntegerList-class Man page
LLint Man page
LLint-class Man page
List Man page
List-class Man page
LogicalList Man page
LogicalList-class Man page
MGI2Ensembl Man page
MGI2Ensembl-class Man page
Matrix Man page
Matrix-class Man page
NumericList Man page
NumericList-class Man page
Protein2Gene-class Man page
RangedSummarizedExperiment-class Man page
RectangularData-class Man page
RefSeqGenes-class Man page
RefSeqTranscripts-class Man page
Rle Man page
Rle-class Man page
RleList Man page
RleList-class Man page
SimpleList Man page
SimpleList-class Man page
SingleCellExperiment Man page
SingleCellExperiment-class Man page
SplitDataFrameList Man page
SplitDataFrameList-class Man page
SummarizedExperiment Man page
SummarizedExperiment-class Man page
Tx2Gene Man page
Tx2Gene-class Man page
UCSCGenes-class Man page
UCSCTranscripts-class Man page
URLencode Man page
Vector-class Man page
WormBaseGenes-class Man page
WormBaseTranscripts-class Man page
aggregate Man page
aggregateCellsToSamples Man page
aggregateCols Man page
aggregateRows Man page
alert Man page
alertDanger Man page
alertInfo Man page
alertSuccess Man page
alertWarning Man page
annotable Man page
antiJoin Man page
anyDuplicated Man page
append Man page
appendToBody Man page
arrow Man page
as Man page
as.DataFrame Man page
as.SummarizedExperiment Man page
as.data.frame Man page
as.data.table Man page
as.factor Man page
as.formula Man page
as.list Man page
as.matrix Man page
as.table Man page
as.vector Man page
as_tibble Man page
assay Man page
assay<- Man page
assayNames Man page
assayNames<- Man page
assays Man page
assays<- Man page
assignAndSaveData Man page
atomic-class Man page
atomize Man page
autopadZeros Man page
axisTicks Man page
barcodePattern Man page
basejump Man page
basejump-package Man page
basejumpTestsURL Man page Source code
basename Man page
basenameSansExt Man page
cacheURL Man page
calculateMetrics Man page
camelCase Man page
capitalize Man page
capture.output Man page
cbind Man page
cell2sample Man page
classContains Man page
coerce Man page
coerceToList Man page
colData Man page
colData<- Man page
colSums Man page
collapseToString Man page
colnames Man page
colnames<- Man page
colorRampPalette Man page
column_to_rownames Man page
combine Man page
complete.cases Man page
compress Man page
compressExtPattern Man page
convertGenesToSymbols Man page
convertSampleIDsToNames Man page
convertSymbolsToGenes Man page
convertTranscriptsToGenes Man page
cor Man page
correlation Man page
counts Man page
counts<- Man page
currentEnsemblGenomeBuild Man page
currentEnsemblVersion Man page
currentFlyBaseVersion Man page
currentGencodeGenomeBuild Man page
currentGencodeVersion Man page
currentRefSeqGenomeBuild Man page
currentRefSeqVersion Man page
currentUCSCGenomeBuild Man page
currentWormBaseVersion Man page
data Man page
decode Man page
decompress Man page
defunct Man page
deprecated Man page
detectLanes Man page
detectOrganism Man page
dims Man page
dirname Man page
dist Man page
dl Man page
do.call Man page
dots Man page
dottedCase Man page
download Man page
downloadEnsemblGenome Man page
downloadGencodeGenome Man page
downloadRefSeqGenome Man page
downloadUCSCGenome Man page
droplevels Man page
duplicated Man page
ecdf Man page
emptyRanges Man page
encode Man page
end Man page
end<- Man page
estimateSizeFactors Man page
eval Man page
expand Man page
expand.grid Man page
export Man page
extPattern Man page
factorize Man page
fileDepth Man page
fileExt Man page
filterCells Man page
foldChangeToLogRatio Man page
forceDetach Man page
formalArgs Man page
formalsList Man page
formula Man page
fullJoin Man page
geneNames Man page
geneSynonyms Man page
genomeMetadataNames Man page
geometricMean Man page
get Man page
getListElement Man page
getS3method Man page
getURL Man page
getURLDirList Man page
grep Man page
grepl Man page
gsub Man page
h1 Man page
h2 Man page
h3 Man page
h4 Man page
h5 Man page
h6 Man page
h7 Man page
hclust Man page
head Man page
headtail Man page
humanize Man page
import Man page
importSampleData Man page
importTx2Gene Man page
initDir Man page
innerJoin Man page
integerCounts Man page
interestingGroups Man page
interestingGroups<- Man page
intersect Man page
intersectAll Man page
intersectionMatrix Man page
is Man page
is.unsorted Man page
kebabCase Man page
lanePattern Man page
lapply Man page
leftJoin Man page
loadData Man page
loadDataAsName Man page
loadRemoteData Man page
localOrRemoteFile Man page
logRatioToFoldChange Man page
logcounts Man page
logcounts<- Man page
majorVersion Man page
makeDimnames Man page
makeGRangesFromEnsDb Man page
makeGRangesFromEnsembl Man page
makeGRangesFromGFF Man page
makeGene2SymbolFromEnsDb Man page
makeGene2SymbolFromEnsembl Man page
makeGene2SymbolFromGFF Man page
makeLabel Man page
makeNames Man page
makeProtein2GeneFromEnsembl Man page
makeSampleData Man page
makeSingleCellExperiment Man page
makeSummarizedExperiment Man page
makeTitle Man page
makeTx2GeneFromEnsDb Man page
makeTx2GeneFromEnsembl Man page
makeTx2GeneFromFASTA Man page
makeTx2GeneFromGFF Man page
makeWords Man page
mapCellsToSamples Man page
mapEnsemblBuildToUCSC Man page
mapEnsemblReleaseToURL Man page
mapGenesToIDs Man page
mapGenesToRownames Man page
mapGenesToSymbols Man page
mapHumanOrthologs Man page
mapToDataFrame Man page
mapUCSCBuildToEnsembl Man page
mapply Man page
markdownHeader Man page
markdownLink Man page
markdownList Man page
markdownPlots Man page
markdownTables Man page
match Man page
matchArgsToDoCall Man page Source code
matchEnsemblReleaseToURL Man page Source code
matchHumanOrthologs Man page Source code
matchInterestingGroups Man page
matchSampleColumn Man page
matchesGene2Symbol Man page
matchesInterestingGroups Man page
mcols Man page
mcols<- Man page
mdHeader Man page
mdLink Man page
mdList Man page
mdPlots Man page
mdTables Man page
mean Man page
median Man page
melt Man page
merge Man page
metadata Man page
metadata2 Man page
metadata2<- Man page
metadata<- Man page
metadataBlacklist Man page
metadataDenylist Man page
methodFormals Man page
methodFunction Man page
metrics Man page
metricsCols Man page
metricsPerSample Man page
mget Man page
microplate Man page
minimalSampleData Man page
minorVersion Man page
missingOrNULL-class Man page
model.matrix Man page
multiassignAsEnvir Man page Source code
mutateAll Man page
mutateAt Man page
mutateIf Man page
na.omit Man page
naStrings Man page
ncol Man page
new Man page
nonzeroRowsAndCols Man page
normcounts Man page
normcounts<- Man page
nrow Man page
ol Man page
order Man page
organism Man page
organism<- Man page
packageName Man page
packageVersion Man page
paste Man page
pasteURL Man page
pmax Man page
pmax.int Man page
pmin Man page
pmin.int Man page
pos Man page
prcomp Man page
prepareTemplate Man page
printString Man page
quantile Man page
ranges Man page
rank Man page
rankedMatrix Man page
rbind Man page
rbindToDataFrame Man page
rbindlist Man page
readSampleData Man page Source code
readTx2Gene Man page Source code
realpath Man page
reducedDim Man page
reducedDim<- Man page
reducedDimNames Man page
reducedDimNames<- Man page
reducedDims Man page
reducedDims<- Man page
reexports Man page
relevel Man page
relist Man page
removeNA Man page
reorder Man page
rep.int Man page
requireNamespaces Man page
rgb Man page
rightJoin Man page
rowData Man page
rowData<- Man page
rowMeans Man page
rowRanges Man page
rowRanges<- Man page
rowSums Man page
rownames Man page
rownames<- Man page
rownames_to_column Man page
sampleData Man page
sampleData<- Man page
sampleNames Man page
sampleNames<- Man page
sanitizeNA Man page
sanitizePercent Man page
sanitizeSampleData Man page
sanitizeVersion Man page
sapply Man page
saveData Man page
sd Man page
selectIf Man page
selectSamples Man page
sem Man page
semiJoin Man page
sentenceCase Man page
separator Man page
seqnames Man page
sessionInfo Man page
session_info Man page
setdiff Man page
shell Man page
showHeader Man page
showSlotInfo Man page
sizeFactors Man page
sizeFactors<- Man page
snakeCase Man page
sort Man page
sortUnique Man page Source code
sparseMatrix Man page
sparseMatrix-class Man page
split Man page
splitByLevel Man page
standardizeCall Man page
start Man page
start<- Man page
str_detect Man page
str_dup Man page
str_extract Man page
str_extract_all Man page
str_length Man page
str_locate_all Man page
str_match Man page
str_match_all Man page
str_pad Man page
str_replace Man page
str_replace_all Man page
str_replace_na Man page
str_split Man page
str_split_fixed Man page
str_sub Man page
str_subset Man page
str_trunc Man page
stripGeneVersions Man page
stripTranscriptVersions Man page
sub Man page
subset Man page
subsetPerSample Man page
summary Man page
t Man page
table Man page
tail Man page
tapply Man page
tibble Man page
toInlineString Man page
toStringUnique Man page Source code
topCellsPerSample Man page
tpm Man page
transmit Man page
transmuteAt Man page
transmuteIf Man page
trim Man page
txt Man page
ul Man page
union Man page
unique Man page
unit Man page
uniteInterestingGroups Man page
unlist Man page
unlistToDataFrame Man page
unsplit Man page
untar Man page
updateMessage Man page
upperCamelCase Man page
validObject Man page
var Man page
verbatim Man page
which Man page
which.max Man page
which.min Man page
width Man page
width<- Man page
zerosVsDepth Man page
steinbaugh/seqcloudr documentation built on March 21, 2021, 8:44 a.m.