Files in stemangiola/RNAseq-noise-model
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/evaluation_tools.R
R/kfold.R
R/sampling_multi.R
R/sbc.R
R/simulators.R
R/simulators_helpers.R
R/test_data.R
README.md
RNASeqNoiseModel.Rproj
big_data/README.md
dev/AGENDA_MEETING.md
dev/README.md
dev/basic_tests.Rmd
dev/gamma_multinomial_helpers.R
dev/gamma_multinomial_report.Rmd
dev/gamma_multinomial_report_img/mean_variance.png
dev/gene_wise_read_count_distribution.png
dev/generate_quantities.Rmd
dev/generate_quantities_R.Rmd
dev/integrate_gamma_multinomial.Rmd
dev/kfold.Rmd
dev/kfold_test.Rmd
dev/logNormal_tests.Rmd
dev/log_lik_sampling_latent.Rmd
dev/loo.Rmd
dev/overall_read_count_distribution.png
dev/prepocess_TCGA_tibble.R
dev/prepocess_cellTypes_tibble.R
dev/sbc.Rmd
dev/test_sampling_multi.Rmd
dev/test_sum_nb.Rmd
docs/NB_filtering_cell_types.Rmd
docs/NB_filtering_cell_types.html
docs/NB_filtering_cell_types_files/figure-html/predict_values cell_type TCGA-1.png
docs/NB_filtering_cell_types_files/figure-html/predict_values cell_type-1.png
docs/NB_filtering_cell_types_files/figure-html/unnamed-chunk-1-1.png
docs/NB_filtering_cell_types_files/figure-html/unnamed-chunk-2-1.png
docs/NB_filtering_cell_types_files/figure-html/unnamed-chunk-3-1.png
docs/NB_filtering_cell_types_files/figure-html/unnamed-chunk-5-1.png
docs/NB_filtering_cell_types_files/figure-html/unnamed-chunk-6-1.png
docs/dummy.html
docs/fit_parsed_500_genes_TCGA_leukimia_18022019.RData
local_temp_data/README.md
stan/dirichlet_multinomial.rds
stan/dirichlet_multinomial.stan
stan/dirichlet_multinomial_base.stan
stan/gamma_multinomial.stan
stan/gamma_multinomial_2.stan
stan/gamma_multinomial_2_nb.stan
stan/gamma_multinomial_2_nb_dm.stan
stan/logNormal_multinomial.stan
stan/logNormal_simpler_tests.stan
stan/logNormal_tests.stan
stan/logStudent_multinomial.stan
stan/multinomial.stan
stan/nb_multinomial_approx.stan
stan/negBinomial.stan
stan/negBinomial_deseq2.stan
stan/negBinomial_tidy.stan
stan/test_sum_nb.stan
