R/data.R

In stemangiola/rpharma2020_tidytranscriptomics: Introduction to Tidy Transcriptomics

#' pasilla
#'
#' pasilla gene count data in SummarizedExperiment format
#'
#' @format  A SummarizedExperiment object with the 7 pasilla samples. Generated from the code in data-raw/pasilla.R.
#' @source \url{https://bioconductor.org/packages/release/data/experiment/html/pasilla.html}
#' @usage data(pasilla)
"pasilla"

#' de_gate_gates
#'
#' Stefano's gate list
#'
#' @format  A list of gates to use. Gates consist of x and y coordinates.
#' @usage data(de_gate_gates)
"de_gate_gates"


#' cell_type_df
#'
#' Stefano's cell type df
#'
#' @format  A list of gates to use. Gates consist of x and y coordinates.
#' @usage data(cell_type_df)
"cell_type_df"

#' BRCA
#'
#' Subset of the TCGA BRCA data set
#'
#' @format  A tidy data frame.
#' @usage data(BRCA)
"BRCA"

#' pbmc_small
#'
#' A small Seurat dadaset of single cell RNA sequencing data
#'
#' @format  A Seurat object.
#' @usage data(pbmc_small)
"pbmc_small"