as_SummarizedExperiment-methods: as_SummarizedExperiment

as_SummarizedExperimentR Documentation

as_SummarizedExperiment

Description

as_SummarizedExperiment() creates a 'SummarizedExperiment' object from a 'tbl' or 'tidybulk' tbl formatted as | <SAMPLE> | <TRANSCRIPT> | <COUNT> | <...> |

Usage

as_SummarizedExperiment(
  .data,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL
)

## S4 method for signature 'spec_tbl_df'
as_SummarizedExperiment(
  .data,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL
)

## S4 method for signature 'tbl_df'
as_SummarizedExperiment(
  .data,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL
)

## S4 method for signature 'tidybulk'
as_SummarizedExperiment(
  .data,
  .sample = NULL,
  .transcript = NULL,
  .abundance = NULL
)

Arguments

.data

A tibble

.sample

The name of the sample column

.transcript

The name of the transcript/gene column

.abundance

The name of the transcript/gene abundance column

Value

A 'SummarizedExperiment' object

A 'SummarizedExperiment' object

A 'SummarizedExperiment' object

A 'SummarizedExperiment' object


stemangiola/tidyBulk documentation built on Oct. 22, 2024, 5:19 a.m.