pbmc_small_nested_interactions: Intercellular ligand-receptor interactions for 38 ligands...
In stemangiola/tidySCE: Brings SingleCellExperiment to the Tidyverse
pbmc_small_nested_interactions R Documentation
Intercellular ligand-receptor interactions for
38 ligands from a single cell RNA-seq cluster.
Description
A dataset containing ligand-receptor interactions within a sample.
There are 38 ligands from a single cell cluster versus 35 receptors
in 6 other clusters.
Usage
data(pbmc_small_nested_interactions)
Format
A 'tibble' containing 100 rows and 9 columns.
Cells are a subsample of the PBMC dataset of 2,700 single cells.
Cell interactions were identified with 'SingleCellSignalR'.
- sample
sample identifier
- ligand
cluster and ligand identifier
- receptor
cluster and receptor identifier
- ligand.name
ligand name
- receptor.name
receptor name
- origin
cluster containing ligand
- destination
cluster containing receptor
- interaction.type
type of interation, paracrine or autocrine
- LRscore
interaction score
Value
'tibble'
Source
stemangiola/tidySCE documentation built on Dec. 20, 2024, 10:19 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| pbmc_small_nested_interactions | R Documentation |
Intercellular ligand-receptor interactions for 38 ligands from a single cell RNA-seq cluster.
Description
A dataset containing ligand-receptor interactions within a sample. There are 38 ligands from a single cell cluster versus 35 receptors in 6 other clusters.
Usage
data(pbmc_small_nested_interactions)
Format
A 'tibble' containing 100 rows and 9 columns. Cells are a subsample of the PBMC dataset of 2,700 single cells. Cell interactions were identified with 'SingleCellSignalR'.
- sample
sample identifier
- ligand
cluster and ligand identifier
- receptor
cluster and receptor identifier
- ligand.name
ligand name
- receptor.name
receptor name
- origin
cluster containing ligand
- destination
cluster containing receptor
- interaction.type
type of interation, paracrine or autocrine
- LRscore
interaction score
Value
'tibble'
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.