FlowSorted.Blood.WGBS.BLUEPRINT: Whole genome bisulfite-sequencing data on sorted blood cell...
In stephaniehicks/FlowSorted.Blood.WGBS.Blueprint: Whole genome bisulfite-sequencing data on sorted blood cell populations from BLUEPRINT
Description
Usage
Format
Examples
View source: R/FlowSorted.Blood.WGBS.BLUEPRINT.R
Description
This package measures the DNA methylation of
sorted cell types from whole blood (venous and cord)
from the BLUEPRINT consortia using the whole genome
bisulfite-sequencing platform (WGBS). BigWig files
were downloaded and converted to HDF5 files. Data
are available on ExperimentHub as a data package.
The HDF5 files were created using
the files:
/inst/scripts/bp-01-create-data-object.R
/inst/scripts/bp-02-download-data.sh
/inst/scripts/bp-03-create-hdf5-bsseq-object.R
and the object downloaded from ExperimentHub.
Usage
1
Format
A BSseq object with 44 WGBS samples and
approximately 29 million CpGs (or 29039352 CpGs
to be exact).
Examples
1
2
3
4
library(ExperimentHub)
library(FlowSorted.Blood.WGBS.BLUEPRINT)
fs_wgbs <- FlowSorted.Blood.WGBS.BLUEPRINT()
dim(fs_wgbs)
stephaniehicks/FlowSorted.Blood.WGBS.Blueprint documentation built on Nov. 5, 2019, 9:35 a.m.
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Description Usage Format Examples
View source: R/FlowSorted.Blood.WGBS.BLUEPRINT.R
Description
This package measures the DNA methylation of sorted cell types from whole blood (venous and cord) from the BLUEPRINT consortia using the whole genome bisulfite-sequencing platform (WGBS). BigWig files were downloaded and converted to HDF5 files. Data are available on ExperimentHub as a data package.
The HDF5 files were created using the files: /inst/scripts/bp-01-create-data-object.R /inst/scripts/bp-02-download-data.sh /inst/scripts/bp-03-create-hdf5-bsseq-object.R and the object downloaded from ExperimentHub.
Usage
1 |
Format
A BSseq object with 44 WGBS samples and approximately 29 million CpGs (or 29039352 CpGs to be exact).
Examples
1 2 3 4 | library(ExperimentHub)
library(FlowSorted.Blood.WGBS.BLUEPRINT)
fs_wgbs <- FlowSorted.Blood.WGBS.BLUEPRINT()
dim(fs_wgbs)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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