Files in stephens999/ashr

Methods for Adaptive Shrinkage, using Empirical Bayes

NEWS.md R/RcppExports.R R/ash.R R/ashCI.R R/ash_estmode.R R/ash_pois.R R/ashr-package.R R/ashutility.R R/get_functions.R R/igmix.R R/lik.R R/logF.R R/mix.R R/mix_opt.R R/normalmix.R R/output.R R/process_args.R R/set_data.R R/tnormalmix.R R/truncbeta.R R/truncgamma.R R/truncgen.R R/truncnorm.R R/trunct.R R/unimix.R README.md man/ash.Rd man/ash_pois.Rd man/ashci.Rd man/ashr.Rd man/calc_logLR.Rd man/calc_loglik.Rd man/calc_mixmean.Rd man/calc_mixsd.Rd man/calc_null_loglik.Rd man/calc_null_vloglik.Rd man/calc_vlogLR.Rd man/calc_vloglik.Rd man/cdf.ash.Rd man/cdf_conv.Rd man/cdf_post.Rd man/comp_cdf.Rd man/comp_cdf_conv.Rd man/comp_cdf_conv.normalmix.Rd man/comp_cdf_conv.unimix.Rd man/comp_cdf_post.Rd man/comp_dens.Rd man/comp_dens_conv.Rd man/comp_dens_conv.normalmix.Rd man/comp_dens_conv.unimix.Rd man/comp_mean.Rd man/comp_mean.normalmix.Rd man/comp_mean.tnormalmix.Rd man/comp_mean2.Rd man/comp_postmean.Rd man/comp_postmean2.Rd man/comp_postprob.Rd man/comp_postsd.Rd man/comp_sd.Rd man/comp_sd.normalmix.Rd man/comp_sd.tnormalmix.Rd man/compute_lfsr.Rd man/cxxMixSquarem.Rd man/dens.Rd man/dens_conv.Rd man/dlogf.Rd man/estimate_mixprop.Rd man/gen_etruncFUN.Rd man/get_density.Rd man/get_lfdr.Rd man/get_post_sample.Rd man/igmix.Rd man/lik_binom.Rd man/lik_logF.Rd man/lik_normal.Rd man/lik_normalmix.Rd man/lik_pois.Rd man/lik_t.Rd man/log_comp_dens_conv.Rd man/log_comp_dens_conv.normalmix.Rd man/log_comp_dens_conv.unimix.Rd man/loglik_conv.Rd man/loglik_conv.default.Rd man/mixEM.Rd man/mixIP.Rd man/mixSQP.Rd man/mixVBEM.Rd man/mixcdf.Rd man/mixcdf.default.Rd man/mixmean2.Rd man/mixprop.Rd man/my_e2truncbeta.Rd man/my_e2truncgamma.Rd man/my_e2truncnorm.Rd man/my_e2trunct.Rd man/my_etruncbeta.Rd man/my_etruncgamma.Rd man/my_etrunclogf.Rd man/my_etruncnorm.Rd man/my_etrunct.Rd man/my_vtruncnorm.Rd man/ncomp.Rd man/ncomp.default.Rd man/normalmix.Rd man/pcdf_post.Rd man/plogf.Rd man/plot.ash.Rd man/plot_diagnostic.Rd man/pm_on_zero.Rd man/post_sample.Rd man/post_sample.normalmix.Rd man/post_sample.unimix.Rd man/posterior_dist.Rd man/postmean.Rd man/postmean2.Rd man/postsd.Rd man/print.ash.Rd man/prune.Rd man/qval.from.lfdr.Rd man/set_data.Rd man/summary.ash.Rd man/tnormalmix.Rd man/unimix.Rd man/vcdf_post.Rd man/w_mixEM.Rd tests/testthat.R tests/testthat/helper_functions.R tests/testthat/testCI.R tests/testthat/test_+uniform.R tests/testthat/test_binom.R tests/testthat/test_df.R tests/testthat/test_lik.R tests/testthat/test_logF.R tests/testthat/test_log_comp_dens.R tests/testthat/test_loglik.R tests/testthat/test_missing.R tests/testthat/test_mode.R tests/testthat/test_moments.R tests/testthat/test_myetruncnorm.R tests/testthat/test_old_vs_new.R tests/testthat/test_one_obs.R tests/testthat/test_optmethod.R tests/testthat/test_output.R tests/testthat/test_pois.R tests/testthat/test_postsample.R tests/testthat/test_prior.R tests/testthat/test_prune.R tests/testthat/test_tnormal.R tests/testthat/test_truncgen.R tests/testthat/test_trunct.R tests/testthat/test_unitprior.R tests/testthat/test_w_mixEM.R vignettes/adaptive_shrinkage.Rmd