API for stephenslab/susiF.alpha
Sum of Single Functions
| Global functions | |
|---|---|
| EBmvFR | Man page Source code |
| EBmvFR.workhorse | Man page Source code |
| EM_pi | Source code |
| Eloglik | Man page |
| Eloglik.susiF | Man page |
| HMM_regression | Man page |
| HMM_regression.susiF | Man page Source code |
| L_mixsq | Man page Source code |
| L_mixsq.mixture_normal | Man page Source code |
| L_mixsq.mixture_normal_per_scale | Man page Source code |
| Quantile_transform | Source code |
| TI_ash_smooth | Source code |
| TI_regression | Man page |
| TI_regression.susiF | Man page Source code |
| affected_reg | Man page Source code |
| cal_Bhat_Shat | Source code |
| cal_KL_l | Man page Source code |
| cal_KL_l.susiF | Man page Source code |
| cal_L_mixsq_s_per_scale | Source code |
| cal_clfsr | Man page |
| cal_clfsr.mixture_normal | Man page Source code |
| cal_clfsr.mixture_normal_per_scale | Man page Source code |
| cal_cor_cs | Man page Source code |
| cal_lfsr | Man page |
| cal_lik | Man page Source code |
| cal_lik_EBmvFR | Source code |
| cal_partial_resid | Man page Source code |
| cal_partial_resid.EBmvFR | Man page Source code |
| cal_partial_resid.susiF | Man page Source code |
| cal_post_effect | Source code |
| cal_purity | Man page Source code |
| cal_zeta | Man page Source code |
| calc_lfdr | Source code |
| calc_lfsr | Source code |
| calc_np | Source code |
| change_fit | Man page Source code |
| check_cs | Man page Source code |
| check_cs.susiF | Man page Source code |
| colScale | Man page Source code |
| discard_cs | Man page Source code |
| discard_cs.susiF | Man page Source code |
| effective.effect | Source code |
| estimate_residual_variance | Man page Source code |
| estimate_residual_variance.EBmvFR | Man page Source code |
| estimate_residual_variance.susiF | Man page Source code |
| expand_susiF_obj | Source code |
| fast_lm | Source code |
| fit_effect.EBmvFR | Source code |
| fit_lm | Source code |
| gen_EM_out | Source code |
| gen_wavelet_indx | Man page Source code |
| get_ER2 | Man page Source code |
| get_ER2.EBmvFR | Man page |
| get_ER2.susiF | Man page |
| get_G_prior | Man page Source code |
| get_G_prior.EBmvFR | Source code |
| get_G_prior.susiF | Man page Source code |
| get_alpha | Source code |
| get_alpha.susiF | Source code |
| get_exclusions | Source code |
| get_fitted_effect | Man page Source code |
| get_fitted_effect.susiF | Man page Source code |
| get_lBF | Source code |
| get_lBF.susiF | Source code |
| get_objective | Man page |
| get_objective.susiF | Man page |
| get_pi | Source code |
| get_pi.susiF | Source code |
| get_pi0 | Man page Source code |
| get_pi0.pi_mixture_normal | Man page Source code |
| get_pi0.pi_mixture_normal_per_scale | Man page Source code |
| get_pi_G_prior | Man page Source code |
| get_pi_G_prior.mixture_normal | Man page Source code |
| get_pi_G_prior.mixture_normal_per_scale | Man page Source code |
| get_post_F | Source code |
| get_post_F.susiF | Source code |
| get_post_F2 | Source code |
| get_post_F2.susiF | Source code |
| get_sd_G_prior | Man page Source code |
| get_sd_G_prior.mixture_normal | Man page Source code |
| get_sd_G_prior.mixture_normal_per_scale | Man page Source code |
| greedy_backfit | Man page Source code |
| greedy_backfit.susiF | Man page Source code |
| init_EBmvFR_obj | Man page Source code |
| init_prior | Man page Source code |
| init_prior.default | Man page Source code |
| init_susiF_obj | Man page Source code |
| interpol_mat | Source code |
| log_BF | Man page |
| log_BF.mixture_normal | Man page |
| log_BF.mixture_normal_per_scale | Man page |
| loglik_SFR | Man page |
| loglik_SFR.susiF | Man page |
| loglik_SFR_post | Man page |
| loglik_SFR_post.susiF | Man page |
| m_step | Man page Source code |
| m_step.lik_mixture_normal | Man page |
| m_step.lik_mixture_normal_per_scale | Man page Source code |
| merge_effect | Man page Source code |
| merge_effect.susiF | Man page Source code |
| name_cs | Source code |
| name_cs.susiF | Source code |
| out_prep | Man page Source code |
| out_prep.EBmvFR | Man page Source code |
| out_prep.susiF | Man page Source code |
| plot.susiF | Man page |
| plot_susiF | Man page |
| plot_susiF_effect | Man page |
| plot_susiF_pip | Man page |
| post_mat_mean | Man page |
| post_mat_mean.mixture_normal | Man page Source code |
| post_mat_mean.mixture_normal_per_scale | Man page Source code |
| post_mat_sd | Man page |
| post_mat_sd.mixture_normal | Man page Source code |
| post_mat_sd.mixture_normal_per_scale | Man page Source code |
| pval2se | Source code |
| remap_data | Man page Source code |
| rename_format_output | Source code |
| scale_m_step | Source code |
| shifter | Source code |
| simu_IBSS_ash_vanilla | Man page Source code |
| simu_IBSS_per_level | Man page Source code |
| simu_test_function | Source code |
| smash_2lw | Source code |
| smash_regression | Man page |
| smash_regression.susiF | Man page Source code |
| susiF | Man page Source code |
| susiF.workhorse | Man page Source code |
| test_stop_cond | Man page Source code |
| test_stop_cond.EBmvFR | Man page Source code |
| test_stop_cond.susiF | Man page Source code |
| univariate_HMM_regression | Source code |
| univariate_TI_regression | Source code |
| univariate_TI_regression_IS | Source code |
| update_ELBO | Man page |
| update_ELBO.susiF | Man page |
| update_KL | Man page Source code |
| update_KL.susiF | Man page Source code |
| update_Shat_pois | Source code |
| update_alpha | Man page Source code |
| update_alpha.susiF | Man page Source code |
| update_alpha_hist | Man page Source code |
| update_alpha_hist.susiF | Man page Source code |
| update_ash_pi | Man page Source code |
| update_cal_credible_band | Source code |
| update_cal_credible_band.susiF | Source code |
| update_cal_cs | Man page Source code |
| update_cal_cs.susiF | Man page Source code |
| update_cal_fit_func | Man page Source code |
| update_cal_fit_func.EBmvFR | Man page Source code |
| update_cal_fit_func.susiF | Man page Source code |
| update_cal_indf | Source code |
| update_cal_indf.EBmvFR | Source code |
| update_cal_indf.susiF | Source code |
| update_cal_pip | Man page |
| update_cal_pip.susiF | Man page |
| update_effect.EBmvFR | Source code |
| update_lBF | Man page |
| update_lBF.susiF | Man page |
| update_lfsr | Man page |
| update_lfsr.susiF | Man page |
| update_lfsr_effect | Man page |
| update_lfsr_effect.susiF | Man page |
| update_pi | Source code |
| update_pi.susiF | Source code |
| update_pi_hist | Source code |
| update_prior | Man page Source code |
| update_prior.mixture_normal | Man page Source code |
| update_prior.mixture_normal_per_scale | Man page Source code |
| update_prior_EBmvFR | Source code |
| update_residual_variance | Man page Source code |
| update_residual_variance.EBmvFR | Man page Source code |
| update_residual_variance.susiF | Man page Source code |
| update_susiF_obj | Source code |
| update_susiF_obj.susiF | Source code |
| wavelet_reg | Source code |
| which_dummy_cs | Man page Source code |
| which_dummy_cs.susiF | Man page Source code |
| which_lowcount | Man page Source code |
